Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01689 ATGATGAATGGAAGGAACAGGTTCCCCTTTACACCATCACAGTGGCAAGAGCTTGAACACCAAGCTCTCATTTACAAGTACATGGCTTCAGGCATTTCCATTCCACCTGATCTTCTCTTCACCATAAAAAGGAGCTATTTTGATTCCCCTCTGTCCTCAAGGCTTTTGCCTAACCAGCCACAGCACTTTGGATGGAACTACCTTCAGATGGGTCTGGGAAGAAAAATAGACCCTGAGCCAGGTAGGTGCAGAAGAACTGATGGCAAGAAATGGAGGTGCTCCAAAGAGGCATACCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACATCAACAAACACAAATGCTTCAACACAACAACAAGCAATCTCATCAATCACCAAAATTAACAGCACTCTTTCACCTCTTGCATCATCTGAGTCTCACCACCCCCCTCAACACTATGGCTCCTTTCTCTACCATCATCACCCTCCATCAAGATCCTCTGGCATTGGCTTGTCTTTTGAAGACAACAGTGCCCCCTTGTTTCTTGACACTGGCTCTCAGTCCAACACAGACTGCAGGAGTAGGTATGTCTATGGAGAGAAAGAGGAGGTGGATGAGCATGCTTTCTTCACAGAGCCTTGTGGTGTTATGAAAAGTTTCTCTGCTTCCTCTATGGATGACTCTTGGCAACTCACACCATTGACTATGAGCTCCTCCTCTTCTTCTTCCAAACAGAGGAGTTTCTTTGGCTTGTCCAATGACTACTCTTGCTTGCAACTTCAGGGCCACTCAAAGCAGCAGCAAGAGCATCAAGATCAGGGTTGCTACATGCTAGGTAGTGGTCAACTTGTGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTTGATGAATGGCCCCACAAAGGAAGAGAAGGCTCTTGGCTTGATTTGGATGACAAATCTTCCACAACCCAACTTTCAATTTCCATTCCCACCTCTTCTCATGATTTTCCAACTTTCAGCTCCAGAACCCACCATGATGGGTGA 1059 0.4561 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSYFDSPLSSRLLPNQPQHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTSTNTNASTQQQAISSITKINSTLSPLASSESHHPPQHYGSFLYHHHPPSRSSGIGLSFEDNSAPLFLDTGSQSNTDCRSRYVYGEKEEVDEHAFFTEPCGVMKSFSASSMDDSWQLTPLTMSSSSSSSKQRSFFGLSNDYSCLQLQGHSKQQQEHQDQGCYMLGSGQLVKEEPQKTVHRFFDEWPHKGREGSWLDLDDKSSTTQLSISIPTSSHDFPTFSSRTHHDG 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01689 352 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo2g01689 352 MobiDBLite consensus disorder prediction 329 343 - -
Pumo2g01689 352 Pfam WRC 78 120 IPR014977 -
Pumo2g01689 352 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Pumo2g01689 352 PANTHER GROWTH-REGULATING FACTOR 5 8 340 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pumo2g01689 352 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pumo2g01689 352 MobiDBLite consensus disorder prediction 329 352 - -
Pumo2g01689 352 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01689 Pumo-Chr2 31757906 31760130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01689 7 120 GRF Transcription Factor Family AT3G13960 71.053 1.47e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pumo2g01689 WRC 7.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01689 - - gmx:100781613 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01689 2 31757906 31760130 Pumo2g01689 2 31757906 31760130 ECH
Pumo4g00649 4 8548137 8550192 Pumo2g01689 2 31757906 31760130 PCT