Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g01687 | ATGGAAATGAAGACCTGTTGTGAAAAGGAAGGGCCTTGGTCTTCTGAGGAAGACGAAATTCTTATGAAATACGTTCAAGTCCATGGAGAAGGAAATTGGAGACTCCTACCCAAAAGAGCTGGTTTGAAACGATGTGGTGAAAGTTGCAAACATCGATGGTTAAACTATCTCAAGCCAACTACCACCCATAGAGGAAACATTTCTTTAGATGAAGAAGAGCTCATAATCAGACTTCATAAGCTCTTGGGAAATAGATGGTCTCTCATTGCAGGACGGTTACCTGGACGCACCGAGAATGAGATCGAGCACTTTTGGAATACTCATTTGAGCAGAAAAGAAGAAGAAGAAAAAGAGAAGCACAACAACAACGAATTACTGATCCCAAGCACAAGTGTAGCCATAAGTACTAAAATACCCGGTGTTGATCAATCTCTCAGGTGCACCAAAAACTCCTTCCACATCGATCCTACAGAATATTCTCCCCACCCTGTGATTAAACCTAAAGCTGTGAGGTTAACCAAGGCTGTCATGCCAACACAAAATGGCTCGAATAATAATGGCCACAACGTTAACCCTTCTGCATCCACTAATTTATAA | 597 | 0.4171 | MEMKTCCEKEGPWSSEEDEILMKYVQVHGEGNWRLLPKRAGLKRCGESCKHRWLNYLKPTTTHRGNISLDEEELIIRLHKLLGNRWSLIAGRLPGRTENEIEHFWNTHLSRKEEEEKEKHNNNELLIPSTSVAISTKIPGVDQSLRCTKNSFHIDPTEYSPHPVIKPKAVRLTKAVMPTQNGSNNNGHNVNPSASTNL | 198 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g01687 | 198 | ProSiteProfiles | Myb-like domain profile. | 9 | 57 | IPR001005 | - | |
Pumo2g01687 | 198 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
Pumo2g01687 | 198 | FunFam | MYB-related transcription factor | 9 | 62 | - | - | |
Pumo2g01687 | 198 | CDD | SANT | 12 | 57 | IPR001005 | - | |
Pumo2g01687 | 198 | PANTHER | TRANSCRIPTION FACTOR MYB8-RELATED-RELATED | 1 | 133 | - | - | |
Pumo2g01687 | 198 | SMART | sant | 63 | 111 | IPR001005 | - | |
Pumo2g01687 | 198 | SMART | sant | 9 | 59 | IPR001005 | - | |
Pumo2g01687 | 198 | ProSiteProfiles | Myb-like domain profile. | 64 | 109 | IPR001005 | - | |
Pumo2g01687 | 198 | MobiDBLite | consensus disorder prediction | 177 | 198 | - | - | |
Pumo2g01687 | 198 | SUPERFAMILY | Homeodomain-like | 10 | 105 | IPR009057 | - | |
Pumo2g01687 | 198 | CDD | SANT | 68 | 109 | IPR001005 | - | |
Pumo2g01687 | 198 | Gene3D | - | 10 | 61 | - | - | |
Pumo2g01687 | 198 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 64 | 113 | IPR017930 | - | |
Pumo2g01687 | 198 | Pfam | Myb-like DNA-binding domain | 64 | 109 | IPR001005 | - | |
Pumo2g01687 | 198 | Pfam | Myb-like DNA-binding domain | 11 | 57 | IPR001005 | - | |
Pumo2g01687 | 198 | Gene3D | - | 66 | 125 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g01687 | Pumo-Chr2 | 31724806 | 31727895 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g01687 | 1 | 185 | MYB Transcription Factor Family | AT4G21440 | 42.188 | 4.75e-49 | 161 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Pumo2g01687 | Myb_DNA-binding | 4.5e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g01687 | K09422 | - | gmx:778159 | 210.69 |