Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01687 ATGGAAATGAAGACCTGTTGTGAAAAGGAAGGGCCTTGGTCTTCTGAGGAAGACGAAATTCTTATGAAATACGTTCAAGTCCATGGAGAAGGAAATTGGAGACTCCTACCCAAAAGAGCTGGTTTGAAACGATGTGGTGAAAGTTGCAAACATCGATGGTTAAACTATCTCAAGCCAACTACCACCCATAGAGGAAACATTTCTTTAGATGAAGAAGAGCTCATAATCAGACTTCATAAGCTCTTGGGAAATAGATGGTCTCTCATTGCAGGACGGTTACCTGGACGCACCGAGAATGAGATCGAGCACTTTTGGAATACTCATTTGAGCAGAAAAGAAGAAGAAGAAAAAGAGAAGCACAACAACAACGAATTACTGATCCCAAGCACAAGTGTAGCCATAAGTACTAAAATACCCGGTGTTGATCAATCTCTCAGGTGCACCAAAAACTCCTTCCACATCGATCCTACAGAATATTCTCCCCACCCTGTGATTAAACCTAAAGCTGTGAGGTTAACCAAGGCTGTCATGCCAACACAAAATGGCTCGAATAATAATGGCCACAACGTTAACCCTTCTGCATCCACTAATTTATAA 597 0.4171 MEMKTCCEKEGPWSSEEDEILMKYVQVHGEGNWRLLPKRAGLKRCGESCKHRWLNYLKPTTTHRGNISLDEEELIIRLHKLLGNRWSLIAGRLPGRTENEIEHFWNTHLSRKEEEEKEKHNNNELLIPSTSVAISTKIPGVDQSLRCTKNSFHIDPTEYSPHPVIKPKAVRLTKAVMPTQNGSNNNGHNVNPSASTNL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01687 198 ProSiteProfiles Myb-like domain profile. 9 57 IPR001005 -
Pumo2g01687 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo2g01687 198 FunFam MYB-related transcription factor 9 62 - -
Pumo2g01687 198 CDD SANT 12 57 IPR001005 -
Pumo2g01687 198 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 133 - -
Pumo2g01687 198 SMART sant 63 111 IPR001005 -
Pumo2g01687 198 SMART sant 9 59 IPR001005 -
Pumo2g01687 198 ProSiteProfiles Myb-like domain profile. 64 109 IPR001005 -
Pumo2g01687 198 MobiDBLite consensus disorder prediction 177 198 - -
Pumo2g01687 198 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Pumo2g01687 198 CDD SANT 68 109 IPR001005 -
Pumo2g01687 198 Gene3D - 10 61 - -
Pumo2g01687 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 113 IPR017930 -
Pumo2g01687 198 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Pumo2g01687 198 Pfam Myb-like DNA-binding domain 11 57 IPR001005 -
Pumo2g01687 198 Gene3D - 66 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01687 Pumo-Chr2 31724806 31727895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01687 1 185 MYB Transcription Factor Family AT4G21440 42.188 4.75e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g01687 Myb_DNA-binding 4.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01687 K09422 - gmx:778159 210.69