Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01686 ATGGAAACGGAGAAGGACTGTTGTGAAAGAGAAGGTGCTTGGTCTTCTGATGAAGACGAAATTCTTTTGAACTATGTTCAAGTCCGTGGAGAAGGAAATTGGAGGGACCTTCCTAAAAGAGCTGGGTTGAAACGATGTGGTGAGAGTTGCAAACACCGATGGTTTAACTATCTTAAGCCTGCAGCCATCTCTAGAGGAAACATTTCTTTGGATGAACAAGAACTCATAATCAGACTGCATAAGCTCTTGGGGAATAGATGGTCTATCATTGCGGGACGGTTACCAGGACGCACTGAAGATGAGATCAAGAACTACTGGAATACTTATTTGAGCAAGGAGGTGGAAGAGAAGCAAAACAACAACGAACTTCCAAGCACAAGTATGACAACTACTACTACTAGCATGCCTAGTGTTCAATCTCCATGGTACTCCGAAAATTCCGTAGGTTATATCAATCCCACGGAGTCTCCAAATCCTGTGATTAAACCTAAAGTTGTGAGGTTAACTAAGAGTGTCATGCAAAGACATGTAGCTAGCAAATGA 543 0.4236 METEKDCCEREGAWSSDEDEILLNYVQVRGEGNWRDLPKRAGLKRCGESCKHRWFNYLKPAAISRGNISLDEQELIIRLHKLLGNRWSIIAGRLPGRTEDEIKNYWNTYLSKEVEEKQNNNELPSTSMTTTTTSMPSVQSPWYSENSVGYINPTESPNPVIKPKVVRLTKSVMQRHVASK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01686 180 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Pumo2g01686 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 114 IPR017930 -
Pumo2g01686 180 Gene3D - 67 136 - -
Pumo2g01686 180 CDD SANT 69 110 IPR001005 -
Pumo2g01686 180 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 62 IPR017930 -
Pumo2g01686 180 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 134 - -
Pumo2g01686 180 MobiDBLite consensus disorder prediction 116 139 - -
Pumo2g01686 180 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Pumo2g01686 180 MobiDBLite consensus disorder prediction 120 139 - -
Pumo2g01686 180 Gene3D - 11 62 - -
Pumo2g01686 180 SMART sant 10 60 IPR001005 -
Pumo2g01686 180 SMART sant 64 112 IPR001005 -
Pumo2g01686 180 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Pumo2g01686 180 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Pumo2g01686 180 CDD SANT 13 58 IPR001005 -
Pumo2g01686 180 SUPERFAMILY Homeodomain-like 12 106 IPR009057 -
Pumo2g01686 180 FunFam MYB-related transcription factor 10 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01686 Pumo-Chr2 31703330 31706081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01686 7 114 MYB Transcription Factor Family AT3G13540 59.821 3.65e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g01686 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01686 K09422 - gmx:778159 278.87