Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01680 ATGGAGTTGGGTGGTGAGTATGGTGAAGGTGGAAGGTTTGTTGATGGGTATGAGAAAATTGCAAGAAAGGAAGTGGGTAGAGTGGAGATGAGAAAGGTGAGAGATTGGTGTTGTGGTATGGGTGTGTTGGACGAAGCTTCGAGATATGGATACGGAGGTTTATGGGAGGGGAGAAGAAGAAAAGGAAGAGCGGATAGTGGAAGAGGTCATGCATTGTTGAGGAAGGCAGACCGGGTCCGGTTTTTTTCCTCCCGTTCCCTCCTTGACAAAACGACTCCCGCTCTCCCTCGTTTTCTCTTTTCCCCATTTGGGAACGAGTTTGTTTGCGAATCCACAATCGGAGGGAGAATGTCGCTGAATCTCACGGCAAGCGCGATTCCGGCGATAATCGGCGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTGGACGTATCGTTAATCTCCAACAGCAACAACTCGCAGCAGCAGAGATACCGTCTTCTGCTATCCGACGCCGTTTTTTCTCACCACGCTATGCTCGCGACTCAGCTCAACGACCGAGTCCGAACCGGTCGAGTTCAGAAGGGTTCGGTTATTCAGCTTCTCGATTATATATGCACTCCTCTCAAGAACCGCAAGATTATTGTGATTCTAAACATGGAAACTATAATGGCTGAGTGTGAGGTCATTGGGAATCCGAAGCCATACATGGATTCTGATATACCAACTGTGAGAGCTTCAGCTGATAGCACTGTGGAGAATTTGCCCAGGAGTAATAATAGTTCTGCTGCTCAAAATGCAAGTCATAATAACTCGCAGAATTTCAGGCCAACCATTCAACCTCCATATCAACCGCCTCCGGTTTATAAAGGCCGTGGGCCAGTTGTGAAAAATGAGGCGCCAGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAGGGTCGGTGGGCTATCAAGGCAAGGGTAACTGCCAAAGGGGATCTGCGCCGCTATAATAATGCTCGTGGTGATGGGAAAGTCTTCTCATTTGATCTCCTTGATTCCGATGGAGGTGAAATACGAGTAACATGCTTTAATGCTGTCGTTGATCGCTTCTATAATGTAATTGAGGTCGGTAAAGTTTACATGATATCTAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTTTTTTGGAATCAACTTCAACTGTTGAGCTCTGCCCAGACGAGGATGATTCTATACCTAGACAGCAGTTCTCCTTCAGGTCTATCAGTGACATTGAGAATGTTGACAATAACTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCAATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTAAGTCTAAAAGACAGTTCTGGCAGGAGTGTTGAACTTACACTGTGGGGTGAATTCTGCAACAGGGAAGGACAACAGCTGCAAGAGATGGTGGATGCTGGATTTTTCCCAATTTTAGCAGTTAAAGCTGGGAAGGTGAATGATTTTAGTGGAAAGTCGATAGGCTCTATTTCTACCACGCAGCTTTTCATTAATCCTGATTTTCCTGAGGCTCATAGCTTAAGAGAATGGTTTGATCGAGTAGGAAAAGATTCTGCCTCCCTATCTATTTCTAAGGACAATATTCCCGGAGGAGCGAAGAATGAGGTACGCAAAACTGTGTCTCAAATCAAGGATGAAGGTCTGGGGCGGTCAGACAAGCCAGACTGGATAACAGTAAGGGCTTCTATATTATTCATCAAGACCGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGACTAGGTTAGGAAACTCAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAAGCTCAAATTCAGGATGGCACAGGATTAACTTGGGTAACAGCTTTCCAGGAAGCAGGGGAGGAGATTATGGAGTACTCAGCAAAGGATCTGTACTTGTTGAAACATGAACAGCAGGATGATGAGACGTTTGGAGAAATAGTCAAGAGCCGACTCTTCAACCAGTGTATGTTTAGGCTGAAAATCAAAGAGGAATTATATGGTGATGAACAAAAGGTGAAGATTACTGTAGTCAAGGCAGATAAGGTGAACTATTCTTCAGAGAGTAGATACATGCTTGATTCGATTTCCAAGTTTTGTAGGCAGTAA 2235 0.4461 MELGGEYGEGGRFVDGYEKIARKEVGRVEMRKVRDWCCGMGVLDEASRYGYGGLWEGRRRKGRADSGRGHALLRKADRVRFFSSRSLLDKTTPALPRFLFSPFGNEFVCESTIGGRMSLNLTASAIPAIIGGDVNAKPLVQVLDVSLISNSNNSQQQRYRLLLSDAVFSHHAMLATQLNDRVRTGRVQKGSVIQLLDYICTPLKNRKIIVILNMETIMAECEVIGNPKPYMDSDIPTVRASADSTVENLPRSNNSSAAQNASHNNSQNFRPTIQPPYQPPPVYKGRGPVVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDEDDSIPRQQFSFRSISDIENVDNNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQQLQEMVDAGFFPILAVKAGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFDRVGKDSASLSISKDNIPGGAKNEVRKTVSQIKDEGLGRSDKPDWITVRASILFIKTDTFCYTACPLMIGDRQCNKKVTRLGNSRWQCDRCNQEFEECDYRYLLQAQIQDGTGLTWVTAFQEAGEEIMEYSAKDLYLLKHEQQDDETFGEIVKSRLFNQCMFRLKIKEELYGDEQKVKITVVKADKVNYSSESRYMLDSISKFCRQ 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01680 744 CDD RPA1N 125 217 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo2g01680 744 PANTHER REPLICATION FACTOR A 1, RFA1 311 719 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo2g01680 744 SUPERFAMILY Nucleic acid-binding proteins 415 542 IPR012340 -
Pumo2g01680 744 Gene3D - 120 231 IPR012340 -
Pumo2g01680 744 NCBIfam replication factor-a protein 1 (rpa1) 121 740 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pumo2g01680 744 CDD RPA1_DBD_C 567 740 IPR047192 -
Pumo2g01680 744 CDD RPA1_DBD_A 300 403 - -
Pumo2g01680 744 MobiDBLite consensus disorder prediction 244 284 - -
Pumo2g01680 744 FunFam Replication protein A subunit 120 231 - -
Pumo2g01680 744 Gene3D - 549 742 IPR012340 -
Pumo2g01680 744 Pfam OB-fold nucleic acid binding domain 312 395 IPR004365 GO:0003676
Pumo2g01680 744 Gene3D - 297 407 IPR012340 -
Pumo2g01680 744 MobiDBLite consensus disorder prediction 244 272 - -
Pumo2g01680 744 Pfam Replication factor-A protein 1, N-terminal domain 121 218 IPR007199 GO:0003677|GO:0005634|GO:0006260
Pumo2g01680 744 Pfam Replication protein A OB domain 421 525 IPR031657 -
Pumo2g01680 744 SUPERFAMILY Nucleic acid-binding proteins 564 741 IPR012340 -
Pumo2g01680 744 FunFam Replication protein A subunit 550 741 - -
Pumo2g01680 744 Gene3D - 410 548 IPR012340 -
Pumo2g01680 744 FunFam Replication protein A subunit 297 406 - -
Pumo2g01680 744 SUPERFAMILY Nucleic acid-binding proteins 297 411 IPR012340 -
Pumo2g01680 744 FunFam Replication protein A subunit 410 549 - -
Pumo2g01680 744 CDD RPA1_DBD_B 432 539 - -
Pumo2g01680 744 SUPERFAMILY Nucleic acid-binding proteins 117 226 IPR012340 -
Pumo2g01680 744 Pfam Replication factor-A C terminal domain 583 733 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01680 Pumo-Chr2 31523915 31527856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01680 142 736 Core DNA Replication Machinery Family AT2G06510 70.147 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01680 K07466 - gmx:100792409 1150.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01680 2 31523915 31527856 Pumo2g01680 2 31523915 31527856 ECH