Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01676 ATGGGTGATGTTCTTAGCCCCTTCACAATCTCATCCCCTCCTCCACCCTCTTCCCCATCAAGCAAGAACAACAGCATGCCCATGTTGTACTATGGCCTAGTGGTGGTCGGAACCGCGGCCATAGTGCTCGCCATATACAACCTCGTCCTCCTCAGACGGAGCCACACGCGGTCGCAGACTGCAGGGCCAATTGGAGATAATGAACGTGTCCCCGATAGAACAATCAGCTTCGAGGACAGCCAGCAGAGGAACTTGCTGTCGAGCTTCAAGTACAAGAAAGAAATTGTGGCAAAAGAACAAGAAGAGCAAGGAGATGATGACTTTGAGTGCTCGGTTTGCTTATCGGTTTACGAAGAGGGCGAAGAGGTGAGGAAGCTTCCACAGTGCAAGCACTATTTCCACGTTCTTTGCATAGACATGTGGCTTTACTCCCACTTGGATTGCCCCATTTGTAGAACGCCCGTTGTTGGGCCTCTCTGTCCGGTGGAGAATTCGCCTGATGCAATCATGGAATCCGCTGGCAATGGCATCTCTCTCTAG 540 0.5148 MGDVLSPFTISSPPPPSSPSSKNNSMPMLYYGLVVVGTAAIVLAIYNLVLLRRSHTRSQTAGPIGDNERVPDRTISFEDSQQRNLLSSFKYKKEIVAKEQEEQGDDDFECSVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHLDCPICRTPVVGPLCPVENSPDAIMESAGNGISL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01676 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 20 155 IPR044675 -
Pumo2g01676 179 SUPERFAMILY RING/U-box 87 157 - -
Pumo2g01676 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Pumo2g01676 179 CDD RING-H2_EL5-like 109 152 - -
Pumo2g01676 179 MobiDBLite consensus disorder prediction 1 23 - -
Pumo2g01676 179 Pfam Ring finger domain 109 152 IPR001841 -
Pumo2g01676 179 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Pumo2g01676 179 FunFam RING-H2 finger protein ATL1 66 157 - -
Pumo2g01676 179 SMART ring_2 110 151 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01676 Pumo-Chr2 31471980 31472853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01676 20 179 C3H Transcription Factor Family AT1G04360 29.121 5.56e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01676 - - gmx:102668279 283.108