Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01673 ATGGAAAAAAAAGGTAATGATCTAATTTTAAGTGATGACTACATTGAAGGTTACATGAAGCCCTTTCTCTTTTTGAATCTTCCCAACACCGAGTTCAATTCTTCACAAGCTGATTGTAATCACAAAATGGCTCATTCTTCTTATCCTTATGGCGATCCAATTTTTGCTTATGGACCACAAGTTATTAGTCAACCCCAAATGGTACCCCAGATGCTGGGACTAGCATCCACCAGAGTGGCATTACCACTTGATCTTGCAGAAGATGGACCAATTTATGTCAATGCGAAACAATACCATGGTATACTGAGAAGGCGACAATCACGAGCAAAGCTTGAGGCTCATAACAAACTTATCAAAAGTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCTTTGAATAGGGTTAGGGGATCTGGGGGGAGATTTCTCAGCACCAAACAGCTTGCACAGTCTAATGCAGAATTTGTCACCGGTGCACATTCTGGTTCTGACCCTACCAACATATATCAAAAGGAACATCCATCAGAGGTGGAAAGTCATTCCTCAAAAGCTGGAGACAATGCATCTTCTTCCATCACAACCTGCTCCGACCGGCCATGTTTATCCGGTACCAATGTCAATTTTCGGCAGCAGGAGTGCATGTTTCTGGGGAATTCTTCAAACATGGGTGGAGCACCACAGTGCAGCGGGGGACTCACCTTCGGCGGAACAAAGCAACGCGCTTCGGTTGTCCGGTGA 744 0.4516 MEKKGNDLILSDDYIEGYMKPFLFLNLPNTEFNSSQADCNHKMAHSSYPYGDPIFAYGPQVISQPQMVPQMLGLASTRVALPLDLAEDGPIYVNAKQYHGILRRRQSRAKLEAHNKLIKSRKPYLHESRHRHALNRVRGSGGRFLSTKQLAQSNAEFVTGAHSGSDPTNIYQKEHPSEVESHSSKAGDNASSSITTCSDRPCLSGTNVNFRQQECMFLGNSSNMGGAPQCSGGLTFGGTKQRASVVR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01673 247 ProSitePatterns NF-YA/HAP2 subunit signature. 92 112 IPR018362 GO:0003677|GO:0016602
Pumo2g01673 247 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 90 144 IPR001289 GO:0003700|GO:0006355
Pumo2g01673 247 Gene3D - 87 149 - -
Pumo2g01673 247 PRINTS CCAAT-binding transcription factor subunit B signature 121 144 IPR001289 GO:0003700|GO:0006355
Pumo2g01673 247 PRINTS CCAAT-binding transcription factor subunit B signature 90 112 IPR001289 GO:0003700|GO:0006355
Pumo2g01673 247 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 28 194 IPR001289 GO:0003700|GO:0006355
Pumo2g01673 247 SMART cbf3 86 147 IPR001289 GO:0003700|GO:0006355
Pumo2g01673 247 MobiDBLite consensus disorder prediction 159 195 - -
Pumo2g01673 247 ProSiteProfiles NF-YA/HAP2 family profile. 87 147 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01673 Pumo-Chr2 31406639 31411175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01673 44 153 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.684 2.70e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pumo2g01673 CBFB_NFYA 3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01673 K08064 - gmx:100793856 426.402