Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01672 ATGGACGGTGGCGGACAGTACAACCCTCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCAGGGCCGGCATGATCAAGGCCCTCACCACTGATGTTGAGGAATTTTACCAGCAGTGCGATCCTGAAAAGGAGAATTTATGTCTGTATGGATTCCCCACTGAACAATGGGAAGTAAATTTGCCTGCTGAAGAAGTTCCTCCAGAAATTCCCGAGCCAGCATTGGGCATAAATTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAATCAGTGGCTTTCTACTTTGGGGCAAGATTTGGATTTGATAAAGCTGACAGGAAACGCCTGTTCACTATGATTAATGATCTGCCTACAATATTTGAGGTTGTAACTGGATCTGCAAAGAAACAGGCAAAGGAGAAGTCATCAGACCACAACGGCAACAAATCAAAGTCTGGTTCTAAAGGGCGAGGATCTGAACCCGTGAAGTACTCAAAGCCAGTGAAGGATGAGGATGAGGGATTGGATGAAGAAGACGATGATGAGCATGGGGAGACCTTGTGTGGCGCATGTGGGGAGAACTATGCATCTGATGAGTTCTGGATTTGTTGCGACATATGTGAGAAGTGGTTTCATGGCAAGTGTGTGAAGATCACTCCTGCTCGGGCTGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAATAAGAGAGCAAGGCCTTGA 747 0.4766 MDGGGQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPTEQWEVNLPAEEVPPEIPEPALGINFARDGMQEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKQAKEKSSDHNGNKSKSGSKGRGSEPVKYSKPVKDEDEGLDEEDDDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKHYKCPSCSNKRARP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01672 248 MobiDBLite consensus disorder prediction 144 158 - -
Pumo2g01672 248 PANTHER CPG BINDING PROTEIN 8 247 IPR045104 GO:0006355|GO:0042393
Pumo2g01672 248 Pfam PHD-finger 195 244 IPR019787 -
Pumo2g01672 248 SMART PHD_3 194 242 IPR001965 -
Pumo2g01672 248 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Pumo2g01672 248 CDD PHD_AL_plant 194 244 IPR044104 -
Pumo2g01672 248 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Pumo2g01672 248 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Pumo2g01672 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
Pumo2g01672 248 FunFam PHD finger alfin-like protein 187 243 - -
Pumo2g01672 248 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Pumo2g01672 248 MobiDBLite consensus disorder prediction 144 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01672 Pumo-Chr2 31388392 31392030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01672 1 247 Alfin-like Transcription Factor Family AT3G42790 75.502 1.90e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pumo2g01672 Alfin 4.7e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01672 K26274 - gmx:100170699 464.536