Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01647 ATGGCCAGCGGCGAGGCCTATTCGAGCAGTGTTTCGGATGCCACGCGGCTGAGGCTGCTCTCGGAGCAGCTGGGGTCAATCCTGGAGGGCGGGGTTGACTTTTTCTCCGACGCCAAGATCGTGGCCGGCGACGGCCGGGAAGTGGCCGTGCACCGGTGCATTCTGGCGTCCAGGAGCGGCTTCTTCAAGAACGCGTTTGCTGGTGGCGGCGTGCTGCGGCTGAAGGAAGTGGCCAAGGACTATGATGTTGGGTTGGAGGCGCTTGGGATTGTTCTGGCCTATTTGTATAGTGGCAGAGTGAAGAAGCCTTTGCCTCAAGGTGGTGTTTGTGTGGATGATGTGTGTTCCCATTTTGGGTGTAGGCCTGCTGTGGATTTCTTGCTTCAGTTGCTCTATGCTTCCTCCACTTTTCACCTATCTGACTTGGTGACTCTTTATCAGGGACATCTACTAGACATTCTTGATAAGGTGGCAATAGATGACATTTTGGTGGTTCTATCGGTCGCAAATATATGTGGCACAACGTGTGAAAGACTGCTAGCTAGGTGCACTGAGATGATAGTTAAATCTGATGCTGATATCACCACTCTTGAAAAGGCACTGCCTCAACCTTTGGTGAAACAAATCATGGATAAACGAAGAGAACTGGGCTTGTACATGCCCGAAAACTTCAATTTTCCTGACAAACATGTCAACAGAATACACAGGGCACTGGACTCAGATGATGTGGAATTGGTAAGATTGCTTTTGAAAGAGGGGCACACCACTCTTGATGATGCATATGCACTTCACTATGCTGTTGCATACTGTGATGTGAAGACCACCACTGAGCTTCTTGATCTTGGTCTTGCTGATGTGAACCACAAAAACCTTAGGGGCTATAGTGTGCTGCACGTTGCTGCAATGAGGAAAGAGCCTAAGATTATAGTTTCTCTCTTAACAAAGGGGGCACAGCCTTCTGACCTTACTTTGGATGGTAGAAATGCCCTTCAGATTTCAAAGCGTCTCACCAAAGCTGTGGATTATTATAGGTCCACAGAGGAAGGAAAGGTATCATACAATGACCGATTGTGCATAGAGATATTGGAGCAAGCTGAGAGAAGAGAGCCTTTACTTGGAGAGGCATCTCTTTCTCTTGCTATGGCAGGGGATGATTTGCGCATGAAATTGTTGTACCTAGAAAATAGAGTTGGACTGGCGAAAGTGTTGTTTCCCATGGAAGCAAAGGTTATTATGGATATTTCTCAAATTGATGGCACATCTGAATTTCCATCAACAGACATATACTGTCCAAATATTAGCGATCACCAGAGGACAACTGTGGACTTAAACGATGCACCTTTCAGAATGAAGGAAGAACATCTAGTTAGGTTGAGAGCACTGTCTAGAACTGTGGAGTTGGGGAAACGCTTCTTCCCTCGTTGCTCAGAAGTGTTGAATAAGATCATGGATGCTGATGACCTATCTCAGCTTACATGTATGGGTGATGACAGTCCTGAAGATCAACTAAGGAAGCGAAGAAGGTATGTGGAGCTCCAAGAAGTTCTGAATAAGGTCTTCAATGAGGACAAGGAGGAATATGATAGGTCTGCAATGTCATCATCATCCTCTTCCACATCAATGGGAGTAGTGAGACCTAATGCCAATCTAGCCATGAAGAACTAG 1665 0.4655 MASGEAYSSSVSDATRLRLLSEQLGSILEGGVDFFSDAKIVAGDGREVAVHRCILASRSGFFKNAFAGGGVLRLKEVAKDYDVGLEALGIVLAYLYSGRVKKPLPQGGVCVDDVCSHFGCRPAVDFLLQLLYASSTFHLSDLVTLYQGHLLDILDKVAIDDILVVLSVANICGTTCERLLARCTEMIVKSDADITTLEKALPQPLVKQIMDKRRELGLYMPENFNFPDKHVNRIHRALDSDDVELVRLLLKEGHTTLDDAYALHYAVAYCDVKTTTELLDLGLADVNHKNLRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRNALQISKRLTKAVDYYRSTEEGKVSYNDRLCIEILEQAERREPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKVLFPMEAKVIMDISQIDGTSEFPSTDIYCPNISDHQRTTVDLNDAPFRMKEEHLVRLRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLTCMGDDSPEDQLRKRRRYVELQEVLNKVFNEDKEEYDRSAMSSSSSSTSMGVVRPNANLAMKN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01647 554 CDD BTB_POZ_NPR_plant 18 154 - -
Pumo2g01647 554 Gene3D Potassium Channel Kv1.1; Chain A 10 185 IPR011333 -
Pumo2g01647 554 PANTHER REGULATORY PROTEIN NPR3 9 541 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pumo2g01647 554 Pfam Ankyrin repeats (many copies) 262 306 IPR002110 GO:0005515
Pumo2g01647 554 MobiDBLite consensus disorder prediction 526 554 - -
Pumo2g01647 554 MobiDBLite consensus disorder prediction 531 545 - -
Pumo2g01647 554 Pfam Domain of unknown function (DUF3420) 193 235 IPR024228 -
Pumo2g01647 554 Gene3D - 186 418 IPR036770 -
Pumo2g01647 554 SMART BTB_4 36 154 IPR000210 GO:0005515
Pumo2g01647 554 ProSiteProfiles Ankyrin repeat profile. 292 324 IPR002110 GO:0005515
Pumo2g01647 554 SUPERFAMILY POZ domain 33 151 IPR011333 -
Pumo2g01647 554 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 203 356 - -
Pumo2g01647 554 ProSiteProfiles BTB domain profile. 36 104 IPR000210 GO:0005515
Pumo2g01647 554 SMART ANK_2a 229 257 IPR002110 GO:0005515
Pumo2g01647 554 SMART ANK_2a 292 321 IPR002110 GO:0005515
Pumo2g01647 554 SMART ANK_2a 258 288 IPR002110 GO:0005515
Pumo2g01647 554 Pfam NPR1/NIM1 like defence protein C terminal 334 539 IPR021094 -
Pumo2g01647 554 Pfam BTB/POZ domain 34 103 IPR000210 GO:0005515
Pumo2g01647 554 SUPERFAMILY Ankyrin repeat 186 334 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01647 Pumo-Chr2 31037355 31040996 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pumo2g01647 NPR1_like_C 1.9e-88 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01647 K14508 - gmx:100800032 978.393