Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01646 ATGGTGGAGGATTCGAGTACAGACCCAATCGTGTCATGGGGCGAAGATCGTCACAGTTTCGTGGTTTGGGACTCTCACCAATTCAAGCACAATAACTTCTCCAGCTTCCGTCGCCAACTTAACTACTATGGATTTAGGAAGGTTGATTTAGGGCGTTGGGAATTTGCACATGAAGGGTTTCAGGGAGGGAAAAGACATTTGCTGAAGAATATCACAAGAAAAACAAGCAATAACTCAAGCAAGCAACATGAGGATTCACAGGTTCAACTCACCAATGTTAAGGAGCAAGTTCGATGTGCTGAGTTCAAGCAAGATCAAATCTTGGATTTCCTCACCAAAATAGTCCAATGGCTTGATTGTGTTGAGCAATTAATGCACAAAGAGAAGGAAAATGATGGGCTTGGTGGTCCATGCATGGTTAAGAGACGCAAATTGTTAGGAACTCAGTGCCATGTAAGCTTATCTAATAACAACATGGACACCACCCCAGATGTTGGTTATAAACAAGGTTGTGAACAAGACGCAGGCTACGGTGGGATAGTATAA 546 0.4304 MVEDSSTDPIVSWGEDRHSFVVWDSHQFKHNNFSSFRRQLNYYGFRKVDLGRWEFAHEGFQGGKRHLLKNITRKTSNNSSKQHEDSQVQLTNVKEQVRCAEFKQDQILDFLTKIVQWLDCVEQLMHKEKENDGLGGPCMVKRRKLLGTQCHVSLSNNNMDTTPDVGYKQGCEQDAGYGGIV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01646 181 Pfam HSF-type DNA-binding 1 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g01646 181 SUPERFAMILY "Winged helix" DNA-binding domain 1 74 IPR036390 -
Pumo2g01646 181 SMART hsfneu3 1 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo2g01646 181 FunFam Heat stress transcription factor B-4 1 75 - -
Pumo2g01646 181 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 131 IPR027725 -
Pumo2g01646 181 Gene3D - 1 76 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01646 Pumo-Chr2 31031094 31032871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01646 1 149 HSF AT5G54070 39.062 2.72e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo2g01646 HSF_DNA-bind 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01646 K09419 - gmx:100778060 181.8