Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01631 ATGACCTTAACGATGGAAAATGAACCAAAGTTAGAAAATGATGAATATGTTACTGATATAAAGATAAAGTACCAAACCTATTATTGTGAATTCGTTCCTGGATATGAAAAAGTAAGGTTGCCCCTTCTTTTTTCAAAGGATTTCTATCATCAAATACCAAATCGGGTTAAATTACGTGATCCTAATGAAAATGAATTTGAGGTTGAAGTAGAAAAGAAAAATAATAAAGTCTATTTAACTCAAGGAATTCAAATGATTGGAGATTTATATGACCTAACCTATGGGGGATGGCTAACAATGGTATACATAAATCCCACCACTTTTTTGCTGCAAGTGAAAAATAGAATAGGAGATGAAGTTGATTATCCTACTGGGCAAAAGAACCTTAAATTTGATGAGGAGAATGTTCCAATTTGCATATCCGATAATGATATTAATGATGGTCAAGCTATTGATCATCATGTTGACGGTCATTTCTTCCATTCTTTGTTGAAGACATTGACCGTAAATGATGTCACTTCATCTGTATTGCAATTGCCTCTAAGTTTCTGCCAAGTTGCTTTTTCAAAGACTTGCACTGATGTTGAGTTGGTAGATGAAAGAGGCGAAAAATGGAATTGCATCCTAAAGTGGCTGACTCAATCACCGTTGTACTGCAATCTTACGGGTGGATGGGATAAGTTCTGCAAATCAAAGCACCTTAAAGAAGGAACTACTGTAAGGCTAGGCGTATCGAAGGACGATTGTCAAATTATTTACTTTAAGTTGGTTTAA 774 0.3488 MTLTMENEPKLENDEYVTDIKIKYQTYYCEFVPGYEKVRLPLLFSKDFYHQIPNRVKLRDPNENEFEVEVEKKNNKVYLTQGIQMIGDLYDLTYGGWLTMVYINPTTFLLQVKNRIGDEVDYPTGQKNLKFDEENVPICISDNDINDGQAIDHHVDGHFFHSLLKTLTVNDVTSSVLQLPLSFCQVAFSKTCTDVELVDERGEKWNCILKWLTQSPLYCNLTGGWDKFCKSKHLKEGTTVRLGVSKDDCQIIYFKLV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01631 257 Pfam B3 DNA binding domain 164 250 IPR003340 GO:0003677
Pumo2g01631 257 CDD B3_DNA 161 237 IPR003340 GO:0003677
Pumo2g01631 257 ProSiteProfiles B3 DNA-binding domain profile. 162 257 IPR003340 GO:0003677
Pumo2g01631 257 PANTHER B3 DOMAIN-CONTAINING 30 245 - -
Pumo2g01631 257 SUPERFAMILY DNA-binding pseudobarrel domain 31 112 IPR015300 -
Pumo2g01631 257 Gene3D - 149 255 IPR015300 -
Pumo2g01631 257 Gene3D - 23 115 IPR015300 -
Pumo2g01631 257 SUPERFAMILY DNA-binding pseudobarrel domain 161 247 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01631 Pumo-Chr2 30755377 30756583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01631 25 237 REM Transcription Factor Family AT4G31690 21.267 1.20e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo2g01631 B3 6.6e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01631 - K25828 dcr:108194898 46.9802