Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01627 ATGAATATCAAGTATGAAGAGAAAAACCCTCCACTGTCACCTCTAGGAACTGATGATAGTAACTACAATTCTTCTTCAAACCACAGCAATATCACTGTTAGGGTTTGTTCGGATTGCCACACCACTAAGACCCCTCTCTGGAGGAGTGGACCAAAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGTGCCATTGCTGCTGCTGCAACAGCAAATGGAACCAATCTGGTGGAGGCTGAGCAATCTCAAGTGAAGAAGGGAAACAAGTTGCATAGCAAAGGGATGAAGTCCAAAACTGAGGGTGCACCACAGATGAAAAAGAAGCGTAGACTTGGAGGCAAGTATAGAAAGAGGTTTGGTGCTTTTGAGGATTTGACTGTGAGATTGAGTAAGAACATGGCTCTCCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTATCTTATGGCCTACTTCATGGCTTTCCCTCAGATCGTTATATTACTTAG 528 0.4432 MNIKYEEKNPPLSPLGTDDSNYNSSSNHSNITVRVCSDCHTTKTPLWRSGPKGPKSLCNACGIRQRKARRAIAAAATANGTNLVEAEQSQVKKGNKLHSKGMKSKTEGAPQMKKKRRLGGKYRKRFGAFEDLTVRLSKNMALQQVFPQDEKEAAILLMALSYGLLHGFPSDRYIT 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01627 175 ProSitePatterns GATA-type zinc finger domain. 36 61 IPR000679 GO:0006355|GO:0043565
Pumo2g01627 175 SMART GATA_3 30 82 IPR000679 GO:0006355|GO:0043565
Pumo2g01627 175 MobiDBLite consensus disorder prediction 1 26 - -
Pumo2g01627 175 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 7 167 - -
Pumo2g01627 175 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 31 71 - -
Pumo2g01627 175 Pfam GATA zinc finger 36 69 IPR000679 GO:0006355|GO:0043565
Pumo2g01627 175 FunFam GATA transcription factor 21 30 121 - -
Pumo2g01627 175 MobiDBLite consensus disorder prediction 86 117 - -
Pumo2g01627 175 CDD ZnF_GATA 35 63 IPR000679 GO:0006355|GO:0043565
Pumo2g01627 175 Gene3D - 32 125 IPR013088 GO:0006355|GO:0008270
Pumo2g01627 175 MobiDBLite consensus disorder prediction 100 114 - -
Pumo2g01627 175 ProSiteProfiles GATA-type zinc finger domain profile. 34 66 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01627 Pumo-Chr2 30681760 30687030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01627 20 167 C2C2-Gata Transcription Factor Family AT4G26150 38.674 6.72e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo2g01627 GATA 2.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01627 - - gmx:100780875 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00707 4 9230850 9232652 Pumo2g01627 2 30681760 30687030 PCT