Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01623 ATGGAAGATGATGAGGCATGCATCACTGGTCTAAGCCTTGGACTTGGAATGGGAGGGCATGTGCCTAAGAAGGAGAAGCAGAAAGTCCCTTCTTTGGACCTATCCTTTGAGCTTTGTCCTAAAGGGGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCATTGACGTGGATCAACAACATGATAATAAGGCAAAAAAAGGGTTCTTGTGTTTGAAGCACCCTAATGAAACAAGTCCTGATAGCAACAGTAGCAATAACGGTAGCAGAAAGAAACTGAAGCTTACAAAGGAGCAATCAGCCACCCTTGAGGACATTTTCAAGCTCCATAGCACTCTTAACCCTGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTTCTGAAGAAATGTTGTGAGAAACTAACCGATGAGAACCTAAGGCTGAAGAAGGAACTGCAAGAGCTGCGTGCACAAAAGATTGGACCAACACCACTGTACATTCAACTCTCCAAGGCCACAACCTTGACCATTTGTTCATCTTGTGAGAAACTGTTAAAGCCCAATGAAGGGAACAAAGGAGCCATTAACAAATTGCAGAACACCATAGAGTTAGGGGGTTTCTAG 687 0.4338 MEDDEACITGLSLGLGMGGHVPKKEKQKVPSLDLSFELCPKGEQEEEEEEEEEAIDVDQQHDNKAKKGFLCLKHPNETSPDSNSSNNGSRKKLKLTKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQKIGPTPLYIQLSKATTLTICSSCEKLLKPNEGNKGAINKLQNTIELGGF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01623 228 CDD homeodomain 90 147 IPR001356 GO:0003677
Pumo2g01623 228 MobiDBLite consensus disorder prediction 57 71 - -
Pumo2g01623 228 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Pumo2g01623 228 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Pumo2g01623 228 SMART HOX_1 88 150 IPR001356 GO:0003677
Pumo2g01623 228 SMART halz 146 189 IPR003106 GO:0006355|GO:0043565
Pumo2g01623 228 MobiDBLite consensus disorder prediction 42 56 - -
Pumo2g01623 228 Pfam Homeobox associated leucine zipper 146 179 IPR003106 GO:0006355|GO:0043565
Pumo2g01623 228 Gene3D - 81 151 - -
Pumo2g01623 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 208 - -
Pumo2g01623 228 MobiDBLite consensus disorder prediction 1 95 - -
Pumo2g01623 228 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Pumo2g01623 228 SUPERFAMILY Homeodomain-like 75 147 IPR009057 -
Pumo2g01623 228 Coils Coil 145 179 - -
Pumo2g01623 228 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01623 Pumo-Chr2 30577565 30578937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01623 89 205 Homeobox Transcription Factor Family AT4G37790 75.214 3.71e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo2g01623 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01623 K09338 - gmx:100778922 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00719 4 9326497 9328019 Pumo2g01623 2 30577565 30578937 PCT