Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01598 ATGGAGAATATTGGAGAAGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCCAAGAGCTTGACAGTTGGGGGTTGGATGAGGCTTTATCTGGGTACTACGATTCGAGTTCCCCGGATGGTGCTGCTTCATCTGCGGCATCTAAGAACATTGTTTCCGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCGCTTAGATCGGTGGTCCCTAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCAATTGAGTACATCCAGCACTTGCACGAGCAAGAGAAGGTTATCCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCAAAAAAGAGTCCAAGCTATGATTTTGAGCAGGAACAGCTTCCTGTGGTGCTGAGGTCCAAGAAGAAGAGAACAGAGCAGCTATATGATTCTGTTGGTTCAAGAAATTCCCCAATTGAAGTCCTTGAGCTGCGGGTTACATACATGGGGGAGAAAACTGTTGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAAGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAACATCACTTCGTTTTCAGGGAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCATTTGCAGATAAAGATCCAGACAGCCATTGCAGCTCTTAATGACCCTCTAAGCCCCATGAGCATTTGA 732 0.4467 MENIGEEYKHYWETNMFLQTQELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKVIQAEIMELESGMPKKSPSYDFEQEQLPVVLRSKKKRTEQLYDSVGSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDHLQIKIQTAIAALNDPLSPMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01598 243 SMART finulus 53 102 IPR011598 GO:0046983
Pumo2g01598 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 113 IPR036638 GO:0046983
Pumo2g01598 243 Gene3D - 44 112 IPR036638 GO:0046983
Pumo2g01598 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 43 114 - -
Pumo2g01598 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Pumo2g01598 243 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Pumo2g01598 243 Coils Coil 213 233 - -
Pumo2g01598 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 46 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01598 Pumo-Chr2 30021899 30032237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01598 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 65.297 7.50e-91 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo2g01598 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01598 - - gmx:100817978 454.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01598 2 30021899 30032237 Pumo2g01598 2 30021899 30032237 ECH
Pumo4g00737 4 9638852 9646435 Pumo2g01598 2 30021899 30032237 PCT