Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01597 ATGACGGAGCAAACCAGGTTCAGCGTTTTGTGCAGCCTCTTCACGTGGACGCAGCGGAGCAAGTCGGCGGCGAAGAAGCGCGCCAAGTTCCGCAAGTTCCTCGACGCCTTCTGCACCGACCGCAACTTCTTCCCGGCCATTCGCCTCATTCTCCCCAGCCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCGTCTCCCGCGACGCCCCCGACGCCCTCCGCCTCCTCAATTGGCGCAAGGGCGGCGCCGCCACCGGCGCCACCGCCGGCAATTTCGCCCTCGTCGCCGCCGAGGTACTGCAGCGTAGGCAGGGGACGGCTTCGGGTGGATTGACGATAAGGGAGCTGAATGAGTTGCTTGACCGGTTGGCTTCTGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGGAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGTATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGCAATGTCAGAAATCATAATACAAAATGTTCTTGTAGATAGGTGCATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTTGAAACGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGATAGACAGTTATGCTATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAAACTTTGAAGGAACGGCATGAGATTTTGTGTAAAATTGTAAGGCCAATGAAGGGTCGTTTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTCATATTTCTTCTGGTGAACCTTGTTGGTCATTTATTGCTCATAATGTGGATGAAGTTGAGAGGTTTTTCAAAGAAACCATTGAAAATAGAGATGAGGGAATTGTCTTAAAAGACCACAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACGTTCAAGCCGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGTGGAGGAGAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAGCGTCCATCCCCAAATACACACCCTAAGCGATTTATCTCCTTTTGCAGAGTTGGTACTGGACTCTCTGATGACGAGCTTGATGCTGTAGTGACCAAACTAAAACCTTACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATAACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGTCTCAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGTATGAATGCCTTGATGTTCAGTCATTTATAGAACTAGTACATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAACGATCGAAATCCTCCACTAGGGGAGAAAAGAAAAACATGTCCATTGTTCCTTCTCATTTAATTCAAACTGATGTTTCCAGCGTTAAGGGGGGTTCCTTAATATTTTCAAATATGATGTTCTATTTTGTTAATGTGCCTCCATCTCATTCTCTCGAGTCCTTGCACAAAATAATTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAATAACTCAGTCACGCATTGTGTTGCAGCAGACAGCAAGGGGTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTATTAGATTGCTATGAACAAAAGAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTTCTATCTGAACTAACAAAGAAGAAGTTACAAGAAGAAATTGATGAGTTCTCAGACGCTTACTACTTGGACCTTGATCTTGGAGACATCAAGCAGCTCTTAAGCAATATTCATAGGTCAGAAGATGTCAGTAATGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTATGGATGCTCCATTTATTTCCACACTGCAACACCTTCATTGAAAAGAGATTGGCATTTTATATTGCAACTTGCTCTGAGGAGATTCAAGCTCGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTGTGCAACCCATTTAGTGGCCTTGCTTGTGCCAGGTTATCAGACCGACTTTGAACAAATACAGAGTAGTTTCACTTCAGTAGAAAGAAAAATTCTCCGAAGCAAGAGGTTGCATATAGTTAAATCCCAGTGGTTAGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACAGTTTGAAACCCTGGGGAATAGAAGAGTCAACTGCTGAAGATTGTGAACAAGACTTGGGGTTAGAGGCACATCTGAGTGGAGATAATCTAGAAGACCAAAATATTTCTTTCTCTGACAAGGGAAATCAACAGAGAAGTGCAAAAGCTGCGTGTGAAGACAGTATGGCTTTGGTTTCCCAAGAGAAGGGTGGCAAAAGAAAAAGAGGAAGACCTGCAGGCAGTGGTATCAAAAAAGTAAAGCAACCAGCTGTCAAACAAGCTCGAAGAGCACGACCACAAATTGCGAAAAAGCCTGCTAAAATATGTGAATATGAATCTTCAGATGAAAATGATTCTCGTGACAAAATACCAATAGAGCAGGAGATTGACACTAGAGCAGAAACTTTTGATTTGTACAAGAAACATTCAGAACCACAGGAGACTGAGGAACGTGAAAATGTCCGAGTTGCTGAGACTGTGGAAAGTTCTGAACAAAATAAGGTAGACAAGCAGGAGCAAGAGGACTTGAAGGACAATGAACATGAAAGAATGTTGGTTCCTGAAATAGAAATGTCTGATAGGCACAATGAGCAAAACAATGTGTCTGAGAAACTTGAAATTTCAGCTGACCCCCTGCAGGCTATGTTATTTGACATGATTCCTAGCCTTGCCACCCAAAAAGTTGAGCAACCTACGAATCGTAGTGTTAGGGAAGAGAAGCTACCAGAAACCTCCAATGCAGAAGCTGAGCCTACAACTACAAAGAAAAGGAAAGTTAGCTACAAGGATGTTGCTAGTGAGCTTCTGAAGGACTGGTAG 3519 0.4288 MTEQTRFSVLCSLFTWTQRSKSAAKKRAKFRKFLDAFCTDRNFFPAIRLILPSLDRERGSYGLKESVLATSLIDALGVSRDAPDALRLLNWRKGGAATGATAGNFALVAAEVLQRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSEIIIQNVLVDRCILDGEMLVWDTSLKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQTLKERHEILCKIVRPMKGRLEILVPNAGINSHISSGEPCWSFIAHNVDEVERFFKETIENRDEGIVLKDHSSKWEPSDRSGKWLKLKPEYVQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRSKSSTRGEKKNMSIVPSHLIQTDVSSVKGGSLIFSNMMFYFVNVPPSHSLESLHKIIAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKLQEEIDEFSDAYYLDLDLGDIKQLLSNIHRSEDVSNVDHYRKKYCPKDKWSFFYGCSIYFHTATPSLKRDWHFILQLALRRFKLEVLMGGGKVTSNLTCATHLVALLVPGYQTDFEQIQSSFTSVERKILRSKRLHIVKSQWLEDCSDSSQRLPEDSYSLKPWGIEESTAEDCEQDLGLEAHLSGDNLEDQNISFSDKGNQQRSAKAACEDSMALVSQEKGGKRKRGRPAGSGIKKVKQPAVKQARRARPQIAKKPAKICEYESSDENDSRDKIPIEQEIDTRAETFDLYKKHSEPQETEERENVRVAETVESSEQNKVDKQEQEDLKDNEHERMLVPEIEMSDRHNEQNNVSEKLEISADPLQAMLFDMIPSLATQKVEQPTNRSVREEKLPETSNAEAEPTTTKKRKVSYKDVASELLKDW 1172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01597 1172 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Pumo2g01597 1172 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Pumo2g01597 1172 SMART BRCT_7 799 899 IPR001357 -
Pumo2g01597 1172 SMART BRCT_7 653 729 IPR001357 -
Pumo2g01597 1172 SUPERFAMILY BRCT domain 792 911 IPR036420 -
Pumo2g01597 1172 FunFam DNA ligase 1 218 - -
Pumo2g01597 1172 SUPERFAMILY BRCT domain 655 740 IPR036420 -
Pumo2g01597 1172 FunFam DNA ligase 666 780 - -
Pumo2g01597 1172 CDD BRCT_DNA_ligase_IV_rpt1 655 741 - -
Pumo2g01597 1172 ProSiteProfiles BRCT domain profile. 651 739 IPR001357 -
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 612 629 - -
Pumo2g01597 1172 FunFam DNA ligase 798 909 - -
Pumo2g01597 1172 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 442 - -
Pumo2g01597 1172 Gene3D BRCT domain 653 755 IPR036420 -
Pumo2g01597 1172 Gene3D - 444 605 IPR012340 -
Pumo2g01597 1172 CDD OBF_DNA_ligase_IV 448 592 - -
Pumo2g01597 1172 FunFam DNA ligase 444 605 - -
Pumo2g01597 1172 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 4 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo2g01597 1172 SUPERFAMILY Nucleic acid-binding proteins 449 600 IPR012340 -
Pumo2g01597 1172 Pfam ATP dependent DNA ligase C terminal region 465 584 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pumo2g01597 1172 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Pumo2g01597 1172 FunFam DNA ligase 220 443 - -
Pumo2g01597 1172 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 938 956 - -
Pumo2g01597 1172 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Pumo2g01597 1172 Pfam BRCT domain, a BRCA1 C-terminus domain 653 736 IPR001357 -
Pumo2g01597 1172 PANTHER DNA LIGASE 4 3 1165 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 605 632 - -
Pumo2g01597 1172 Gene3D BRCT domain 797 909 IPR036420 -
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 938 1081 - -
Pumo2g01597 1172 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 1126 1160 - -
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 1132 1160 - -
Pumo2g01597 1172 NCBIfam ATP-dependent DNA ligase 61 599 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pumo2g01597 1172 ProSiteProfiles BRCT domain profile. 839 909 IPR001357 -
Pumo2g01597 1172 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pumo2g01597 1172 MobiDBLite consensus disorder prediction 1003 1081 - -
Pumo2g01597 1172 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01597 214 601 Core DNA Replication Machinery Family AT1G08130 27.970 5.79e-31 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01597 K10777 - gmx:100816002 2188.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01597 2 30003870 30019830 Pumo2g01597 2 30003870 30019830 ECH