Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01594 ATGCGGGATGTGGATAATTTAAATAACAAAGGATCTGGAAAATCCAGTTACTCAAAGGAACAGACTAAGTCCAAGCTAGTTTCCTCGAAATTCAAAACAAGTAGCACAAAACGTCAAGAGAAGAAACACAAAGTGAAGTCAAAATCTCATAAACACAGAGCTGGTACAAACACATCAAAGAAGACAGTTACTGATTCTTCTATCAAGGCATCACTTGAGGATTCTTCAAATAAAAAAGTGATTATTAGAAAAAATCGGCATAAAACTGATGGGAAATCTTCGCAGATGCTGTCTTCAACAAAGCTAGAAGGAGGAAAAACTTCTCATAGTTCTGGAATAGAGGAGAATGATGTTGATGGGGAGGCAAAGATTCAAAAACGTAAGAGAAGGAAGAAGAAAAGACAAATGAATAACATGGATGTTGATGATGCTTCACGCCTGCGAAGGAGAACAAGGTACCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCCGGAGAAGGTTGGAAAGGTCAAAGTCGGGAAAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCCATACGCCAGCTGGATTCTCTCAGTTCTGTGGGTAGAATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGTACGTGCAAACGTGCTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGATATTGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACAGCATCAACACAGAAGGAGATGATGAAAATGCATCCAATGATTCAACCAGTTCTTCCGGTCTGTGGTCTTTGAATGGTGAATGTCCTCCAGTAGACGAAGGCATCAGTCATGAATATTATTCTGTTAATAGCTGCATAGATTCCGATGATTCTAGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAAGTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTCAGTACTCTTATGACTCTGCATGAAAGTGAGAATAAATATCCCAATAAAGAGAACAATGATAGAACAAGAGAGGGTTCTTCAGGCATACGAATAAGAAGATCTTGTTTCAGGATTCCGCTTGATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAACGAGCTTCCTCCCAGATCTGTGAAGGACAGTCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTTGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAAAGTTTCACTTCTAAGATCTCAAAGGATTCTATATCTCAAAACGTGGAGAAAGATGAGCTTCTGAAATCAAAGGTCTCCAAAATTACTGTGATTCATTCCCAGAAGGATGGTAAAAACATCACAGGCAAAGAGAAAAATAAATTATCTAACAGTCTTTTGAAGAAAAGGCAACAAAAAATATCTCCACCTTTGGCAAGAGAAAATGGCAACAAGGACTCTATGGAGGTCAGTGATGATGTTAAGTTGAAGAAACTGTTGAAAAAAAGGAAAAGAGGGGTAAATTTTATATTTGAAGGAGATTCTCAGGCAGCAGAGTTGGAATTTGAAAGACTCGGCAAAGTGAAGATTAAACTAGATAGCATAAAGCAAAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGATTCAAATAAACTCTATTCAAATGAACCATCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGGTTGAATAA 2154 0.3867 MRDVDNLNNKGSGKSSYSKEQTKSKLVSSKFKTSSTKRQEKKHKVKSKSHKHRAGTNTSKKTVTDSSIKASLEDSSNKKVIIRKNRHKTDGKSSQMLSSTKLEGGKTSHSSGIEENDVDGEAKIQKRKRRKKKRQMNNMDVDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDAIRQLDSLSSVGRIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCKRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDSHSINTEGDDENASNDSTSSSGLWSLNGECPPVDEGISHEYYSVNSCIDSDDSREIACGRRQRKAVDYKKLYDEMFGKDAPPCEQVSEDEDWGPGKRKRREKESDAVSTLMTLHESENKYPNKENNDRTREGSSGIRIRRSCFRIPLDAVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARYFALKTRRYQSEGEQLQSFTSKISKDSISQNVEKDELLKSKVSKITVIHSQKDGKNITGKEKNKLSNSLLKKRQQKISPPLARENGNKDSMEVSDDVKLKKLLKKRKRGVNFIFEGDSQAAELEFERLGKVKIKLDSIKQKLNEVQNCRAKDSNKLYSNEPSIIYVPTAQLREKVE 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01594 717 MobiDBLite consensus disorder prediction 331 345 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 59 74 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 428 484 - -
Pumo2g01594 717 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
Pumo2g01594 717 MobiDBLite consensus disorder prediction 468 484 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 8 33 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 428 459 - -
Pumo2g01594 717 Pfam PHD-finger 234 289 IPR019787 -
Pumo2g01594 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 283 IPR013083 -
Pumo2g01594 717 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 13 715 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 108 124 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 36 57 - -
Pumo2g01594 717 ProSitePatterns Zinc finger PHD-type signature. 235 286 IPR019786 -
Pumo2g01594 717 SUPERFAMILY FYVE/PHD zinc finger 226 291 IPR011011 -
Pumo2g01594 717 Gene3D - 489 556 - -
Pumo2g01594 717 SMART PHD_3 234 287 IPR001965 -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 597 634 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 92 107 - -
Pumo2g01594 717 FunFam pathogenesis-related homeodomain protein-like 226 286 - -
Pumo2g01594 717 CDD PHD_PRHA_like 234 286 IPR045876 -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 361 377 - -
Pumo2g01594 717 Pfam Homeodomain 500 541 IPR001356 GO:0003677
Pumo2g01594 717 MobiDBLite consensus disorder prediction 1 144 - -
Pumo2g01594 717 ProSiteProfiles Zinc finger PHD-type profile. 232 289 IPR019787 -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 328 380 - -
Pumo2g01594 717 FunFam pathogenesis-related homeodomain protein 489 553 - -
Pumo2g01594 717 MobiDBLite consensus disorder prediction 346 360 - -
Pumo2g01594 717 SUPERFAMILY Homeodomain-like 490 551 IPR009057 -
Pumo2g01594 717 SMART HOX_1 489 551 IPR001356 GO:0003677
Pumo2g01594 717 CDD homeodomain 488 542 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01594 Pumo-Chr2 29961886 29967466 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01594 137 552 Homeobox Transcription Factor Family AT4G29940 58.548 1.32e-157 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pumo2g01594 PHD 1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01594 - - gmx:100787118 1259.97