Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01592 ATGCTTCGGGAACAGACACACCGTCACCGGGGTGATACAGAATCAATTAATATGCGGGATGTGGATAATTTAAATAACAAAGGATCTGGAAAATCCAGTTACTCAAAGGAACAGACTAAGTCCAAGCTAGTTTCCTCGAAATTCAAAACAAGTAGCACAAAACACCCAGAGAAGAAACACAAAGTGAAGTCAAAATCTCATAAACACAGAGCTGGTTCAAACACATCAAAGAAGACAGTTGCTGATTCTTCTATCAAGGCACCACTTGAGGATTCTTCAAATAAAAAAGTGATTATTAGAAAAAATCGGCATAAAATTGATGGGAAATCTTCGCAGATGCTGTCTTCAACAAAGCTAGGAGGAAAAAATTCTCATAGTTCTGGAATAGGGGAGAATGATGTTGATGGGGAGGCAAAGATTCAAAAGCGTAAGAGAAGAAAGAAGAAAAGACGAAGGAATAACATGGATGTTGATGATGCTTCACGCCTGCGAAGGAGAACAAGGTACCTCTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAAAAGATTAGGCCAGAAAAGGAACTACTAAGAGCAAAGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGCCATACGCCAGCTAGATTCTCTCAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGGTCTGTTTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACGTGCAATCGTGCTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCTTGGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATGCCTGATGGTGATATTGCATTACTAAATCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCTGAGAGGAAAGAAGACAGCCACAGCATCAACACAGAAGGAGATGATGAAAATGCATCCAGTGATTCAACCAGTTCTTCCAGTCTGTGGTCTTTAAATGGCGAATGTCCTCCAGTAGACGAAGGCGTCAGTCATGAATATTATTCTGTTAATAGTTGCATAGATTCTGATGATTCTGGGGAAATAGCATGTGGCCGTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCCAGCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGGCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTCAGTACTCTTATGACTCTCCATGAAAGTGAGAATAAATATTCCAATAATGAGAACAATGATGGAACAACAGAGGGTTCTTCGGGCATACGAATAAGAAGATCTTGTTTCAGGATTCCGCTTGATGCAGTGGAGAAACTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCTGTGAAGGACAGTCTTTCAAAAGAGTTGGGGCTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAAGTATCAATCAGAAGGAGAACAGCTTCAAAGTTTCACTTCTAAGATCGCAAAGGATTCTATATCTCAAAACGTAGAGAAAGATGAGCTTCTGAAATCAAAGGTCTCCAAAATTACTGTGATTCATTCCCAGAAGGATGGTAAAAACATCACAGGCAAAGAGAAAAATAAATTATCTAACAGTCTTTCGAAGAAAAGGCAACAAAAAATATCTCCACCTTTGGCAAGAGAAAATGGCAACAAGGACTCTATGGAGGTCAGTGATGATGATAAGTTGAAGAAACTGTTGAAGAAAAGGAAAAGAGGGGTAAATTTTATATTTGAAGGAGATTCTCAGGTAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATCAAACTAGATAGCATGAAGCAAAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGGTTCAAATAAACTCTATTCAAATGAACCCTCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGGTTGAATAA 2202 0.3919 MLREQTHRHRGDTESINMRDVDNLNNKGSGKSSYSKEQTKSKLVSSKFKTSSTKHPEKKHKVKSKSHKHRAGSNTSKKTVADSSIKAPLEDSSNKKVIIRKNRHKIDGKSSQMLSSTKLGGKNSHSSGIGENDVDGEAKIQKRKRRKKKRRRNNMDVDDASRLRRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDAIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDSTWQDVFKEEAAMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDSHSINTEGDDENASSDSTSSSSLWSLNGECPPVDEGVSHEYYSVNSCIDSDDSGEIACGRRQRKAVDYKKLYDEMFGKDAPACEQVSEDEDWGPGKRKRREKESDAVSTLMTLHESENKYSNNENNDGTTEGSSGIRIRRSCFRIPLDAVEKLRQVFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARYLALKTRKYQSEGEQLQSFTSKIAKDSISQNVEKDELLKSKVSKITVIHSQKDGKNITGKEKNKLSNSLSKKRQQKISPPLARENGNKDSMEVSDDDKLKKLLKKRKRGVNFIFEGDSQVAELEFERLSKVKIKLDSMKQKLNEVQNCRAKGSNKLYSNEPSIIYVPTAQLREKVE 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01592 733 MobiDBLite consensus disorder prediction 109 130 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 610 625 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 347 361 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 53 74 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 449 501 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 377 394 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 610 650 - -
Pumo2g01592 733 SUPERFAMILY Homeodomain-like 499 559 IPR009057 -
Pumo2g01592 733 Pfam Homeodomain 516 558 IPR001356 GO:0003677
Pumo2g01592 733 SMART PHD_3 250 303 IPR001965 -
Pumo2g01592 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 299 IPR013083 -
Pumo2g01592 733 ProSiteProfiles 'Homeobox' domain profile. 503 563 IPR001356 GO:0003677
Pumo2g01592 733 FunFam pathogenesis-related homeodomain protein 505 569 - -
Pumo2g01592 733 Gene3D - 505 572 - -
Pumo2g01592 733 SMART HOX_1 505 567 IPR001356 GO:0003677
Pumo2g01592 733 MobiDBLite consensus disorder prediction 1 17 - -
Pumo2g01592 733 Pfam PHD-finger 250 305 IPR019787 -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 1 160 - -
Pumo2g01592 733 FunFam pathogenesis-related homeodomain protein-like 242 302 - -
Pumo2g01592 733 Coils Coil 685 705 - -
Pumo2g01592 733 CDD PHD_PRHA_like 250 302 IPR045876 -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 449 475 - -
Pumo2g01592 733 ProSitePatterns Zinc finger PHD-type signature. 251 302 IPR019786 -
Pumo2g01592 733 ProSiteProfiles Zinc finger PHD-type profile. 248 305 IPR019787 -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 344 396 - -
Pumo2g01592 733 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 32 731 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 362 376 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 18 50 - -
Pumo2g01592 733 MobiDBLite consensus disorder prediction 476 501 - -
Pumo2g01592 733 CDD homeodomain 504 558 IPR001356 GO:0003677
Pumo2g01592 733 MobiDBLite consensus disorder prediction 76 90 - -
Pumo2g01592 733 SUPERFAMILY FYVE/PHD zinc finger 242 307 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01592 Pumo-Chr2 29927050 29938659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01592 149 568 Homeobox Transcription Factor Family AT4G29940 57.798 1.74e-160 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pumo2g01592 Homeodomain 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01592 - - gmx:100787118 1244.57