Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01558 ATGTCGGACAACGCCTCTCCTCAAATAAAGTATGATGTTTTTGTTAGCTTCAGGGGCCAGGACATCCGCAACGGATTTCTTAGCCATTTGATTGAGGCTTTTGAAAGGAAGAAAATAGATGTCTTTGTAGATTATAATCTTGAGAAAGGAGATGAAATATGGCCATCACTTGTCGAAGCAATACAAGGATCATTCATTTCATTGATCATATTCTCACCAGACTATGCTTCTTCTCGTTGGTGTTTAGAAGAACTTGTGACAATACTTGAATGCAGAGAGAACTATGGACGTATTGTAATCCCTGTTTTCTATCATGTAGAACCCACACATGTACGACATCAATGGGGGAGTTACAAAAGTGCTCTTGCAGAGCATGAAAGAAAATATGAGACCAAGGTGCAAATATGGAGACAGGTTTTGAATAAATCTGCTAACTTATCTGGAATTGAGTCATCAAAATTTCCAAATGATGCTGCAGTGCTTAAAGAAATTGTCAATCTGGTACTGAAGAGGTTGGTTAAACCCCATGTTATCTCAAAAGGACTTGTTGGAATTGAAGAGAAAATCACAACTGTAGAATCATGGATAACAAAAGAGCCAAAAGACAACCTTCTTATTGGAATTTGGGGTATGGCCGGTATCGGCAAGACAACCCTTGCAGAAGAAATTTTTAATAAATTACAGTATGAATATGAAGGTTGTTATTTTTTAGCAAATGAAAGAGAAGAATCAAAGAATCATGGAATAATTCCTTTGAAGAAAAAAATATTTTCTGGGCTATTACAATATGATGTGGAAATTTACACAGAAAATTCGTTACCCGATTATATTGTTAGGAGAATTGGCCGTATGACGGTTCTTATTGTTATTGATGACGTGAATGATTTAGATCACTTGGAAAAATTGTTGGGAACTCTTGACAATTTTGGATCAGGTAGCAGAATAATTGTAACAACAAGAGATGAGCAAGTTCTTAAGGCTAAGAAAGTCAAAAAGACATACCATCTTACAGAACTCAGTTTTGATAAAGCACTGGAACTTTTCAAATTGAATGCCTTTAACCAAAGTGATAATCAAAAGGAGTACAATGAGCTATCGCATAGGGTGGTCAATTATGCCAAAGGCATTCCATTAGTTGTTAAAGTTTTGGCTGGTCTTCTTCATGGAAAAAATAAGGAAGAATGGGAAAGTATGCTAGACAAGCTTAAAAAAATGCCTCCTACAGAAGTTTATGAAGTAATGAAACTGAGTTATGATAGTCTAGATCGCAAAGAGCAACAGATTTTTCTATATCTAGCATGTTTCTTTCTTAGATTGAAAACAACGGTGAATGTGGACGAGCTAAAATCTTTATTGAAAGATAATGAAAGTGATAATTCAGTGTTTTATGGGTTAGAAAGATTGAAGGATAAAGCTCTTATAACTATCTCTAAGGATGGTTTTGTATCTATGCATGATAGTATACAAGAAATGGCATGGGAGATTGTTCGTCGAGAGTCTAGCATATCTGGAAGACACAGTCACTTGTGGGATTCTGATGACATCGCTGAAGCATTGAAAAATGACAAGGGTACTGAAGACATTAGAAGCATACAAATTGACATGCGAAAGATTAAGAAGCAGAAGTTAAGCCCTGACATATTTGCTAAGATGAGCAGATTAAAATTTCTGGAAATCTCTGGGAAATATAATGATGATTTAGTTTATATTCTTGCTGAAGGGCTTCAATTTTTGGAAACTGAGCTAAGATTTCTTTATTGGGATCATTACCCTCTAAAATCATTGCCAGAAAATTTTATTGCCAAAAGGCTTGTAATATTGGAATTTCCATTTGGCAGAATGAAAAAACTTTGGGATGGAGTGCAGAATCTGGTGAATTTAAAAAAAGTTGACCTCACTTCCTCCAATAAGTTAGAGGAGCTCCCAGATTTATCGAAAGCCACAAATCTTGAAGAACTGAAACTCGGGGGTTGTACTGAGTTGACAAGTGTGCATCCATCTATTTTCTCCCTGCCCAAACTTGAGAAATTGATCCTTATTCACTGCAAGTCCCTTACCATAGTCGCAAGCGATTCCCATTTGTGCAGCCTCAGTTATCTCTACCTTCTTTTTTGCGAGAATCTTAGGGAATTCTCACTGATATCAGAGAATATGAAAGAACTAAGATTAGGATGGACGAAGGTGAGAGCATTGCCCTCATCATTTGGACTTCAAAGCAACCTTAAATCACTAGATCTAAGAGGAAGTAAGATTGAGAGGTTACCTTCATCCATCAACAATCTTACGCAACTGTTACATCTAGACATACGTTCTTGCAGGGAGCTTCAAACAATACCGGAGCTTCCCATGTTCCTTGAAACTCTAGATGCTGAATGTTGCACTTCACTTCGAACTCTGCCAGAGCTTCCCCGGTTCCTTAAAACACTAAATATCAGAGAATGCAAATTGCTTCGGACTTTACGGGTGCTTCCCCTGTTCCTTAAAACTCTAGATGCCAGTGAATGCATATCATTGCATACTGTGTTGTTTCCTTCAACGACTATTGAAAAATTAAAGGAAAGCAGTAAACGGGTTCTGTTCTGGAATTGCTTGGACTTGAGTAAATATTCTTTAGTGGCTATTGGGCTGAATGCGCAAATTAATGTGATGAAGTTTGCAAACCAACACCTATCTACACCAAATCACCATCATGTTGAAAATTACAGTGATTATGAAGATAATTATGGTGCTTATCAAGCTGTTTACGTGTACCCGGGAAGCAGTGTTCCACCATGGTTGGAGTACAAGACAAGAAATGATTATATAATTATTGATGTCTCTTCTGCTCCACCTTCCCCCCTCCTCGGTTTCATTTTCTGCTTCGTCTTTGGTGAGCGCACAGACATGAATGGAACACATGAAGTTAGCATCACTATAAGTGATTGCAAGGGTAAAGGTAAAGTGGACAGTGACAGTGACAGAGTCAGAATGTACATAGATTATGGCATTGGGATAATTAAATCAGATCAGGTGTGTGTGATATACGACCAAAGATGTTCTGACTTCATAAATAGCAGAGCCAAAAATCAAACAAGGTTTCAAATCCAGGTTACAATGGGGAGACGATACTTACAATGGGCTGACGATCCAGGTTTAAAAGAATTTGGGGTCAGCCCAATAAGCACCTTGGCATATAACAGTTTCATTCAACAAATGGAATTGCGGTGA 3207 0.3757 MSDNASPQIKYDVFVSFRGQDIRNGFLSHLIEAFERKKIDVFVDYNLEKGDEIWPSLVEAIQGSFISLIIFSPDYASSRWCLEELVTILECRENYGRIVIPVFYHVEPTHVRHQWGSYKSALAEHERKYETKVQIWRQVLNKSANLSGIESSKFPNDAAVLKEIVNLVLKRLVKPHVISKGLVGIEEKITTVESWITKEPKDNLLIGIWGMAGIGKTTLAEEIFNKLQYEYEGCYFLANEREESKNHGIIPLKKKIFSGLLQYDVEIYTENSLPDYIVRRIGRMTVLIVIDDVNDLDHLEKLLGTLDNFGSGSRIIVTTRDEQVLKAKKVKKTYHLTELSFDKALELFKLNAFNQSDNQKEYNELSHRVVNYAKGIPLVVKVLAGLLHGKNKEEWESMLDKLKKMPPTEVYEVMKLSYDSLDRKEQQIFLYLACFFLRLKTTVNVDELKSLLKDNESDNSVFYGLERLKDKALITISKDGFVSMHDSIQEMAWEIVRRESSISGRHSHLWDSDDIAEALKNDKGTEDIRSIQIDMRKIKKQKLSPDIFAKMSRLKFLEISGKYNDDLVYILAEGLQFLETELRFLYWDHYPLKSLPENFIAKRLVILEFPFGRMKKLWDGVQNLVNLKKVDLTSSNKLEELPDLSKATNLEELKLGGCTELTSVHPSIFSLPKLEKLILIHCKSLTIVASDSHLCSLSYLYLLFCENLREFSLISENMKELRLGWTKVRALPSSFGLQSNLKSLDLRGSKIERLPSSINNLTQLLHLDIRSCRELQTIPELPMFLETLDAECCTSLRTLPELPRFLKTLNIRECKLLRTLRVLPLFLKTLDASECISLHTVLFPSTTIEKLKESSKRVLFWNCLDLSKYSLVAIGLNAQINVMKFANQHLSTPNHHHVENYSDYEDNYGAYQAVYVYPGSSVPPWLEYKTRNDYIIIDVSSAPPSPLLGFIFCFVFGERTDMNGTHEVSITISDCKGKGKVDSDSDRVRMYIDYGIGIIKSDQVCVIYDQRCSDFINSRAKNQTRFQIQVTMGRRYLQWADDPGLKEFGVSPISTLAYNSFIQQMELR 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01558 1068 Gene3D Ribonuclease Inhibitor 497 717 IPR032675 -
Pumo2g01558 1068 ProSiteProfiles TIR domain profile. 9 172 IPR000157 GO:0007165
Pumo2g01558 1068 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 712 IPR044974 GO:0006952
Pumo2g01558 1068 Gene3D - 175 334 IPR027417 -
Pumo2g01558 1068 SUPERFAMILY L domain-like 536 850 - -
Pumo2g01558 1068 Pfam TIR domain 10 172 IPR000157 GO:0007165
Pumo2g01558 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 432 IPR027417 -
Pumo2g01558 1068 SMART till_3 10 146 IPR000157 GO:0007165
Pumo2g01558 1068 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 148 IPR035897 -
Pumo2g01558 1068 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 174 - -
Pumo2g01558 1068 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Pumo2g01558 1068 Gene3D Ribonuclease Inhibitor 718 894 IPR032675 -
Pumo2g01558 1068 SUPERFAMILY "Winged helix" DNA-binding domain 408 520 IPR036390 -
Pumo2g01558 1068 Pfam NB-ARC domain 186 418 IPR002182 GO:0043531
Pumo2g01558 1068 Gene3D - 5 174 IPR035897 -
Pumo2g01558 1068 PRINTS Disease resistance protein signature 205 220 - -
Pumo2g01558 1068 PRINTS Disease resistance protein signature 373 387 - -
Pumo2g01558 1068 PRINTS Disease resistance protein signature 280 294 - -
Pumo2g01558 1068 PRINTS Disease resistance protein signature 622 638 - -
Pumo2g01558 1068 Gene3D - 338 422 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01558 Pumo-Chr2 29177013 29181536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01558 11 780 WRKY Transcription Factor Family AT4G12020 32.439 4.17e-97 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01558 - - gmx:100819060 1754.57