Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01545 ATGGAGTGGGACAGCAATTCCGATCTCAGCGACGACGACGCCGCCGGTTCGTTTCTCCTAAACGACGACGATGACGACGCCGTTGGACCTCTTCCCTTCCCCGTCCTCCAAACGGCGCCGTGCGGCTTCGTCGTCACCGACGCGCTCGAGCCCGACCACCCTATCATATACGTCAACGCCGTCTTCGAGATGGTCACCGGATACCGCGCTGAAGAAGTGCTCGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATATGCTAAGAGAAGGCATCCATTGGTGGACTCGACTGTTGTTTCAGAGATTAGAAGATGCCTTGACGAAGGGGTTGAATTCCAAGGTGAATTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGGCTGACGCCTATATATGGAGATAATGAGATAACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCGGGTTCTACAATTAAGGAATCTATTAAATCATCAGATCGGTTTCATTCTGTGCTTTCCTCGTTGAATCCTCTTCCAGTGGGGGATCGTAATGTTACTCGTGGAGTTTGTGGGATATTGCAATTAAGTGAAGAGGTATTGTGTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCAATTGTATGAGCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCGAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTTCAGGTGAGTTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGCGTTAATGGTTCTCGTTTGGTTGTATTTGGAGGCTGTGGAAGGCAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCTTGGCATAGTTCCTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGGGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCAATGGAGAAACCTGTCTGGAGAGAGATACCAGTGGCATGGTCTCCACCTTCGCGTCTGGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGCTGGAGATGTGTAACGGGGAGTGGAATGCCAGGCGCTGGAAATCCTGGAGGCATAGCACCTCCTCCTAGACTTGATCATGTGGCTGTCAGCCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCGGGCCTCCATTCTGCATCCCAGCTTTACATACTAGATCCTACTGAGGAGAAGCCTACATGGAGAATCCTAAATGTACCTGGGTGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCCTTGGCTAGTTCTGCCATCTAA 1839 0.4878 MEWDSNSDLSDDDAAGSFLLNDDDDDAVGPLPFPVLQTAPCGFVVTDALEPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPYAKRRHPLVDSTVVSEIRRCLDEGVEFQGELLNFRKDGSPLMNRLRLTPIYGDNEITHVIGIQFFTEANIDLGPLPGSTIKESIKSSDRFHSVLSSLNPLPVGDRNVTRGVCGILQLSEEVLCLKILARLTPRDIASVGSVCRQLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPVWREIPVAWSPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTEEKPTWRILNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01545 612 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Pumo2g01545 612 FunFam Adagio protein 1 197 244 - -
Pumo2g01545 612 Pfam Galactose oxidase, central domain 358 407 - -
Pumo2g01545 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Pumo2g01545 612 CDD PAS 39 148 IPR000014 -
Pumo2g01545 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Pumo2g01545 612 FunFam Putative LOV domain-containing protein 478 611 - -
Pumo2g01545 612 FunFam Putative LOV domain-containing protein 273 477 - -
Pumo2g01545 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 32 609 - -
Pumo2g01545 612 Pfam PAS domain 40 149 IPR000014 -
Pumo2g01545 612 NCBIfam PAS domain S-box protein 52 148 IPR000014 -
Pumo2g01545 612 Gene3D - 476 610 IPR015915 GO:0005515
Pumo2g01545 612 Gene3D PAS domain 33 160 - -
Pumo2g01545 612 SUPERFAMILY Galactose oxidase, central domain 282 597 IPR011043 -
Pumo2g01545 612 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Pumo2g01545 612 FunFam Adagio protein 1 33 160 - -
Pumo2g01545 612 Pfam Galactose oxidase, central domain 296 346 - -
Pumo2g01545 612 Gene3D - 196 244 - -
Pumo2g01545 612 CDD F-box_AtADO-like 199 245 - -
Pumo2g01545 612 Gene3D - 274 475 IPR015915 GO:0005515
Pumo2g01545 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Pumo2g01545 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01545 Pumo-Chr2 28920344 28931768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01545 35 175 AGC Kinase Gene Family AT5G58140 38.356 6.06e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01545 K12115 - gmx:100802828 1164.83