LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g01544	ATGCTATGGCAAAGTGCTGTTTCTGGAGTGGTGGTACTAATAGCAATTATAGCAATAGTATATGCCATTATTGATTGCTTGAAGAAGGCACGAGAAGCAATTCCTGCATACACCCAACTTCCATTTACAGAGAAGGGTCATAAAGCTTCAAAGTCATTTCCTTCAACGTGTGAAATTCAAGTTGTAATACCACCAGATTACACAGTTCAAACTTCAAAAGCTGAGTTTGCAACAATGGAAAGATTCCTAAGCAACATCAACAAGGAGAAATCCATCAGATTCTCTCCTGAGGATCTTGATGTAATTACATGGAACTACTCAACCATATTGGGTTCAGGTGCTTTTGGGGTTGTCTACAAAGGGGAATTGTCCAATGGAGAACATGTGGCTGTCAAAGTTATCAACAGTTTGGACATGGGAATTGAAGAGCAATTCAAAGCAGATGTTAACACCATTGGAAGAACTTACAACATCAATCTACTCAGACTTTATGGCTTCTGCTTCGACCAGGGACAAGCGAGCTCATGTAGCAGATTTGGCCTGGCTAAGCTTTGCGGCAGAGAAAATAACGTTTCAGTCAATACACACTTTAGAGGAACAAAGGGATATGCTGCACCAGAAATGTGGAAGCCTTATCCGGTGACTTACAAGTGCGATGTTTATAGTTTTGGTAATCTCCTCTTTGAAATTGTGGGGAGAAGGCATTTTGATGGTAACTACAGTGAATCACAACAATGGTTTCCAAAATGGGCATGGGATATGTGTGAGAATAATGAATTATCTGTAATGCTTTCACGTTGTGGAATTGAAGAGAAAGACAAGGAGAAAGCTGAGAGAATGTCAAAGGTGGCTCTATGGTGTGTTCAGTATTCACCAGATGATAGACCTCTTATGAGTACCGTAGTGAAGATGTTAGAGGGTGAAATTGAAATTTCCCCACCACCATTTCCCTTCCAAAACCTGGTGTCTGGTAGAATAAGCAAGGGAAAAGAACTTGATCTTGGATTGGACATGTATCCAACACACAAGCAACAAAGAGTCTTCGCCAACATTGTAAGTCCAGGTGCTCAGCACACATTACACAAGAACCATGTGCCCGGTGCATGTCCACATGACGATTTTCAGGATAAGGCGGAGGGCATTTTCAACAATTTTATGAAAATGGCAGTAATAGCATCCATTGTTTCTGGAGTGGTGGGACTAATAGCAATTATAGCAATAGTATATGCCATTATTGAGTGCTTGAAGAAGGCAGGAGAAGCAATTCCTGCATATGCCCAGCTTCCGAGTACAGAGAAGGATCATAAAGCTTCAGAGTCATTTCCTTCAACGAGTGAAATTGCAATAGTAATACCACCAGATTCCACAGTTCAAGGTTCAAAATCTGAGTTTGCAACAATGGAAAGATTCTTAAGCAACATCAATAAGGAGAAACCAATCAGATTCTCTCCTGAGGAACTTGATATCATTACTTGGAGCTACTCAACCATATTGGGTTCAGGTGCCTTTGGGGTTGTCTACAAAGGGGAATTGTCCAATGGAGAACATGTGGCTGTCAAAGTTATCAACAGTTTGGATATGGGAATGGAAGAGCAATTCAAAGCAGAAGTTGGAACCATTGGAAGAACTTACCATGTCAATCTAGTCAGGCTTTATGGCTTCTGCTTCCACCGTGACAAGCGAGCTCTGGTTTATGAGTGTGTGGAAAACGGGTCTCTCGACAAGTACTTGTTTGGCAGCCAGAACCGAGATATTGAGTTCGGGAAGCTTAATGAGATTGCAATTGGAACAGCAAAAGGAATTGCTTATTTACATGAGGAATGTCAACAAAGAATCATTCATTATGATATTAAACCAGAGAATGTTCTTCTTGATGTAAACTTGGAACCTAAGGTAGCAGACTTTGGCTTGGCAAAGCTTTGCAGTAGAGAAAACAACGTTTCAGTCAATACACACTTTAAAGGAACAAGGGGATATGCTGCACCGGAAATGTGGAAGCCTTATCCGGTGACTGAGAAGTGCGATCTTTATAGTTTTGGTATTCTCCTCTTTGAAATTGTAGGGAGGAGAAGGCATTTTGATAGTAACTACAGAGAATCACAACAATGGTTCCCAAAGTGGACAGGGGATATGTTTGAGAATAATGAATTATCTGTAATGCTTTCACTTTGTGGAATTGAAGAGAAAGACAAGGAGAAAGCTGAGAGAATGTCAAAGGTGGCTCTATGGTGTGTTCAGTATTCACCAGATGATAGACCTCTTATGAGTACTGTGGTGAAGATGTTAGAGGGTGAAATTGAAATTTCTAGACCTCCATTTCCCTTCCAACACATGGTGTCTGTTAAGCCAAACTTGACTCTACATGGAAGCACTACAGATTCAGGTAGTGGTACTACTGCATCATGGGAGACAGAATCTTCCACAGAATCTGGCTCCAAAATCAAGAACAATACATTTCAGATTGAAAAACCTACTTAG	2478	0.408	MLWQSAVSGVVVLIAIIAIVYAIIDCLKKAREAIPAYTQLPFTEKGHKASKSFPSTCEIQVVIPPDYTVQTSKAEFATMERFLSNINKEKSIRFSPEDLDVITWNYSTILGSGAFGVVYKGELSNGEHVAVKVINSLDMGIEEQFKADVNTIGRTYNINLLRLYGFCFDQGQASSCSRFGLAKLCGRENNVSVNTHFRGTKGYAAPEMWKPYPVTYKCDVYSFGNLLFEIVGRRHFDGNYSESQQWFPKWAWDMCENNELSVMLSRCGIEEKDKEKAERMSKVALWCVQYSPDDRPLMSTVVKMLEGEIEISPPPFPFQNLVSGRISKGKELDLGLDMYPTHKQQRVFANIVSPGAQHTLHKNHVPGACPHDDFQDKAEGIFNNFMKMAVIASIVSGVVGLIAIIAIVYAIIECLKKAGEAIPAYAQLPSTEKDHKASESFPSTSEIAIVIPPDSTVQGSKSEFATMERFLSNINKEKPIRFSPEELDIITWSYSTILGSGAFGVVYKGELSNGEHVAVKVINSLDMGMEEQFKAEVGTIGRTYHVNLVRLYGFCFHRDKRALVYECVENGSLDKYLFGSQNRDIEFGKLNEIAIGTAKGIAYLHEECQQRIIHYDIKPENVLLDVNLEPKVADFGLAKLCSRENNVSVNTHFKGTRGYAAPEMWKPYPVTEKCDLYSFGILLFEIVGRRRHFDSNYRESQQWFPKWTGDMFENNELSVMLSLCGIEEKDKEKAERMSKVALWCVQYSPDDRPLMSTVVKMLEGEIEISRPPFPFQHMVSVKPNLTLHGSTTDSGSGTTASWETESSTESGSKIKNNTFQIEKPT	825

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g01544	825	MobiDBLite	consensus disorder prediction	786	825	-	-
	Pumo2g01544	825	Pfam	Protein kinase domain	495	760	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g01544	825	SMART	serkin_6	492	762	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g01544	825	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	612	624	IPR008271	GO:0004672\|GO:0006468
	Pumo2g01544	825	ProSiteProfiles	Protein kinase domain profile.	492	773	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo2g01544	825	Gene3D	Phosphorylase Kinase; domain 1	445	567	-	-
	Pumo2g01544	825	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	13	170	-	-
	Pumo2g01544	825	SUPERFAMILY	Protein kinase-like (PK-like)	479	763	IPR011009	-
	Pumo2g01544	825	Pfam	Protein tyrosine and serine/threonine kinase	107	172	IPR001245	GO:0004672\|GO:0006468
	Pumo2g01544	825	Pfam	Protein tyrosine and serine/threonine kinase	177	305	IPR001245	GO:0004672\|GO:0006468
	Pumo2g01544	825	Gene3D	Phosphorylase Kinase; domain 1	68	170	-	-
	Pumo2g01544	825	SUPERFAMILY	Protein kinase-like (PK-like)	97	319	IPR011009	-
	Pumo2g01544	825	FunFam	Putative receptor-like protein kinase	568	770	-	-
	Pumo2g01544	825	Gene3D	Transferase(Phosphotransferase) domain 1	568	770	-	-
	Pumo2g01544	825	ProSitePatterns	Protein kinases ATP-binding region signature.	498	520	IPR017441	GO:0005524
	Pumo2g01544	825	ProSitePatterns	Protein kinases ATP-binding region signature.	110	132	IPR017441	GO:0005524
	Pumo2g01544	825	Gene3D	Transferase(Phosphotransferase) domain 1	171	315	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g01544	Pumo-Chr2	28702946	28709969	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g01544	481	775	Receptor kinase-like Gene Family	AT5G38280	41.060	9.11e-73	249

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-Os	Pumo2g01544		Pkinase	1.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g01544	-		-	gmx:100820269	753.821