Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01543 ATGAAGACCAAGGTGCAACTTTGGAGACATGCTTTGAATAAGTCTGCTGATTTATCTGGAATTGAGTCATCAAAGTTTCGAAATGATGCTGAGTTGGTTAAAGAAATTGTCAATCTTCTGCTGAAGAGGTTGGTTAAACCCTTGGTTACTTCAAAAGGACTTGTTGGAATTGGCGAAAAAATTGCAACGGTAGAATCATGGATAAGAGAAGAGCCCACAAACACTTGTCTTATTGGAATTTGGGGTATGGGCGGTGTCGGCAAGACAACCCTTGCAGAAGAAGTATTTAATAAACTACAATCTGAATATGACAATTGTTATTTTTTAGCCAATGAAAGAGAAGAATCAAACAAACATGGAATAGTTTTTTTGAAGGGAAAAATTTTTTCTGGACTATTAGGATATGATGTAAAAATTTATACACCAAATTCGTTGCCTGAAGATATTGTTAGGAGAATTGGTAGTATGAAGGTTCTTATTGTCCTTGATGATGTGAATGATTCAAGTCACATAGAAAAATTGTTGGGAATTCTTGATAATTTTGGATCAGGTAGCAAAATAATTGTAACAACTAGAGATGAGCAAGTTCTTGAGGCTAACAAAGTCAATAAGACATACCAACTTAGAGAATTAAGTTCTGATAAAGCACTTGAACTTTTCAATTTGAATGTCTTTAAACAAAGCGACCAGCAAAGAGAGTACAATGAGCTATCAGAAAGGGTAGTCAATTATGCCCAAGGAATTCCCTTAGTTGTTAAAGTTTTGGCTGGTCTTCTTTGTGGAAAAAATAAGGAAGAATGGGAAAGTATGCTAGACAAGCTTAAAAAAATGCCTCCTACAGAAGTTTATCAAGTAATGAAATTGAGTTACGATGGTCTTGATTACAAAGAGCAACAAATTTTTCTAGATATGGCATGTTTCTTATTTAGAACACATATTGTACATGTGGGCGATCTAAAATCTTTATTGAAAGATAATGAAAGTGATAATTCAGTGGCTTTTAGGTTAGCAAGGCTCAAAGACAAAGCTCTTATAACATTCTCTGGGGATAATATTGTATCTATGCATGATAGTTTACAAGAAATGGCTTGGGAGATTGTTCGTCAAGAGTCTATTGAAGACCCTGGAAGCCGTAGTCGGTTGTGGGATCCCGATGACATATATGAAGCATTGAGAAATGACAAGGAGCTTCCAGATTTATCAAAAGCCACAAATCTTGAAGTACTGGATCTCCGGAGTTGTTTTAATTTGACAAGTGTGCATCCGTCTGTTTTCTCTCTGCCCAAACTTGAGAAATTGGACCTTAGTTACTGCCGTTCCCTTTCCATACTCGCAAATGATTCCCATTTTCGCAGACCCAGTTCATCTCAACCTTCATTTTTCTGA 1386 0.3615 MKTKVQLWRHALNKSADLSGIESSKFRNDAELVKEIVNLLLKRLVKPLVTSKGLVGIGEKIATVESWIREEPTNTCLIGIWGMGGVGKTTLAEEVFNKLQSEYDNCYFLANEREESNKHGIVFLKGKIFSGLLGYDVKIYTPNSLPEDIVRRIGSMKVLIVLDDVNDSSHIEKLLGILDNFGSGSKIIVTTRDEQVLEANKVNKTYQLRELSSDKALELFNLNVFKQSDQQREYNELSERVVNYAQGIPLVVKVLAGLLCGKNKEEWESMLDKLKKMPPTEVYQVMKLSYDGLDYKEQQIFLDMACFLFRTHIVHVGDLKSLLKDNESDNSVAFRLARLKDKALITFSGDNIVSMHDSLQEMAWEIVRQESIEDPGSRSRLWDPDDIYEALRNDKELPDLSKATNLEVLDLRSCFNLTSVHPSVFSLPKLEKLDLSYCRSLSILANDSHFRRPSSSQPSFF 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01543 461 Gene3D - 210 294 IPR042197 -
Pumo2g01543 461 PRINTS Disease resistance protein signature 152 166 - -
Pumo2g01543 461 PRINTS Disease resistance protein signature 77 92 - -
Pumo2g01543 461 PRINTS Disease resistance protein signature 425 441 - -
Pumo2g01543 461 PRINTS Disease resistance protein signature 245 259 - -
Pumo2g01543 461 Pfam NB-ARC domain 67 285 IPR002182 GO:0043531
Pumo2g01543 461 SUPERFAMILY L domain-like 355 445 - -
Pumo2g01543 461 Gene3D - 1 41 IPR035897 -
Pumo2g01543 461 Gene3D - 42 207 IPR027417 -
Pumo2g01543 461 SUPERFAMILY "Winged helix" DNA-binding domain 281 391 IPR036390 -
Pumo2g01543 461 Pfam Leucine Rich Repeat 429 449 IPR001611 GO:0005515
Pumo2g01543 461 Pfam Leucine Rich Repeat 405 421 IPR001611 GO:0005515
Pumo2g01543 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 303 IPR027417 -
Pumo2g01543 461 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 389 IPR044974 GO:0006952
Pumo2g01543 461 Gene3D Ribonuclease Inhibitor 315 460 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01543 Pumo-Chr2 28648701 28653690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01543 8 394 WRKY Transcription Factor Family AT4G12020 31.443 1.76e-50 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01543 - - ccaj:109792249 588.571