Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01540 ATGGTTGAAAATATGAAGAGAAGCAGCTTTGAAGTGTTGGGAATGTGCTGTGCTACAGAAGCAGCACTGGTTGAAAGAATTGTGAAGCCTCTTCATGGAGTCAAAGATGTCTCAGTGATAGTCCCTACCCGAACAGTTACTGTGGTCCATGATGTTCTCTTGATTTCTGAGTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGAAGCTAGTTTGAGACTACAGGGAGAGACTGATAATGAAAAGAAATGGCCAGATTTAACTACAATGGTGTGTGGCTTGTTACTTGCACTTTCTTTCTTGAAGTATGTATATCAACCTTTGGGATGGTTGGCACTTGGTTCTGTTGTCATTGGCTTCCCTAAAGTTCTACTCAGGGCCATAGCTTCCATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTCTATTGGCAGTGTGTGGTACTGCTGCTTTACAAGATTTTTGGGAGGCTGGAATCATCATCTTCCTATTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCTATGTCCTCTTTAACAAGCATGGCTCCTCAAAAGGCCGTTATTGCTGAAACTGGGGAACGTGTCGACGTCAATGATGTTAAGATCAATACCATACTTGCAGTCAAGGCTGGTGACGCTATTCCTCTTGATGGGATCGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTACCTGTGATCAAAGAGTTAGATTCAGTAGTATGGGCTGGAACTATTAATGTGAATGGATATATAAGTGTAAAAACTACCGTGCTGGCAAAAGACACAGTGGTGGCTAGAATGTCAAAACTTGTTGAAGAGGCTTCTAGCAGAAAATCTCGAACACAAAGATTCATTGATAATTTTGCAAAGTACTATATTCCTGCTGTTGTCTTGATTTCAGCTAGCATAGCTGTGGTTCCAGCTGCATTAAAAGTTCCTGATATTAAGCCTTGGTTTCATCTGGCAATTGTGGTTTTATTAAGTGCATGCCCTTGTGCTCTCATCCTCTCCACACCTGTTGCAATCTTTTGTGGTCTCACAAAAGCTGCAATAAGTGGATTACTACTGAAAGGTGGAGATTATATTGAAACACTTTCTGGAATTAAGACAGTGGCTTTTGATAAAACGGGCACAATAACGAGAGGAGAGTTCACCGTGACAGATTTTTCTGTTGTAGATGACATTAGCATTGAAACTTTATTGTACTGGGTTTCAAGTATTGAGTGTAAATCAAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTTGAATTCTATCAAGCCTATCTCTGAAAATGTGGAGAATTTTCAAAATTTTCCAAGGGAAGGAGTTTCTGGTACAATTGATGGGAAGGATATCTATATAGGCAATAGGAGAATTGGTGCTAGAGCTGGCTCTGAAAGAGTTGATTGTCACATGCAATTTCAAAGCCATGAAATTTCTACCCCGAAACAATACTGTGGACCAACTCTGGTTGGAGCCTTCAGCTTAGTTGATACCTGCAGATCAGGTGCTTTGGAGGCAATAGAAGAGCTAAAGTTGTTAGGCGTGAGATCAGTCATGCTAACAGGAGATAGCTCTCAGGCTGCTATGTATGTTCAGAGTCAGTTGAACCATGCTCTAGACATTGTTCATGCAGAGCTTCTACCCGCAGATAAGTCAGTGATCATTGAGAATTTCAAGAAAGATGGGCTAACAGCCATGATTGGAGATGGCATGAATGATGCTCCTGCATTAGCCACAGCTGACATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTTGCAAATGAGTCAGGCAATGCAATTCTCATGTCAAATGACATCCGAAAAATACCTGAAGCCATTCGCCTAGCTAGAAAAACTACTAGAAAGCTCATTGAGAATGTCATTATTTCAATTGGCTTCAAGAGTGTCATACTTGCATTGGCAATTGCAGGATACCCTATAGTCTGGCTTGCTGTGTTGACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGAGAAACCTAAATATGAAAGAAAATCTACCAGTTCTAAATACGGCACCTTCTTGGAAGATATGACCACAACTCTACTTGACAAGAAAAGTAATAGCAATGAGAACCAAGCACTTCTTACTGCTGAAAAGTGTGGTAACGATTGTTGTAAAAACGACACTTATCGTGTAGCAACTACAAGCAAGAATGAATCTTCTGGACTTTCAAAGTTGAGCTCACACAAGGGAAACCACAATGCAAACTTGGTCTCTATTGAAGTGCATATAGTGAAACCTTTCAATGGTTGTTGTCTAGGCAAAGTCAAAATGTGTGAGGATTCCTCATGCAGAACAAATAATAGCTCTGATTGTTGCCAAGAGCAATCTAAGACTGAAAAATGTGACACTGGTTCTATTGTGACACAAGATGCCAGCATTGCCACCTTGGAGTCTGATGGCTATAAGGACAAGTCCGTGGATATTTCAGAGTTGTCTGGGACAAGTGGGATTCCCAAGTGTTGCAAGAACTCGTGCTGTAATGAAAGTGTTAACCATGTTACTAGCCTTTGCCTTGGCCAGCCAGAAATTATTATTGAGTGA 2652 0.4087 MVENMKRSSFEVLGMCCATEAALVERIVKPLHGVKDVSVIVPTRTVTVVHDVLLISESQIADALNAARLEASLRLQGETDNEKKWPDLTTMVCGLLLALSFLKYVYQPLGWLALGSVVIGFPKVLLRAIASIKALTLNINILVLLAVCGTAALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMAPQKAVIAETGERVDVNDVKINTILAVKAGDAIPLDGIVVEGKCEVDEKMLTGESLPVIKELDSVVWAGTINVNGYISVKTTVLAKDTVVARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVVLISASIAVVPAALKVPDIKPWFHLAIVVLLSACPCALILSTPVAIFCGLTKAAISGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVTDFSVVDDISIETLLYWVSSIECKSSHPMAAALVEYGMLNSIKPISENVENFQNFPREGVSGTIDGKDIYIGNRRIGARAGSERVDCHMQFQSHEISTPKQYCGPTLVGAFSLVDTCRSGALEAIEELKLLGVRSVMLTGDSSQAAMYVQSQLNHALDIVHAELLPADKSVIIENFKKDGLTAMIGDGMNDAPALATADIGISMGISGSALANESGNAILMSNDIRKIPEAIRLARKTTRKLIENVIISIGFKSVILALAIAGYPIVWLAVLTDVGTCLLVILNSMLILQEKPKYERKSTSSKYGTFLEDMTTTLLDKKSNSNENQALLTAEKCGNDCCKNDTYRVATTSKNESSGLSKLSSHKGNHNANLVSIEVHIVKPFNGCCLGKVKMCEDSSCRTNNSSDCCQEQSKTEKCDTGSIVTQDASIATLESDGYKDKSVDISELSGTSGIPKCCKNSCCNESVNHVTSLCLGQPEIIIE 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01540 883 CDD P-type_ATPase_HM 90 689 - -
Pumo2g01540 883 NCBIfam cadmium family heavy metal-translocating P-type ATPase 139 691 - -
Pumo2g01540 883 SFLD p-type atpase 371 640 IPR044492 -
Pumo2g01540 883 Gene3D - 399 519 IPR023299 GO:0000166
Pumo2g01540 883 Pfam Heavy-metal-associated domain 10 63 IPR006121 GO:0046872
Pumo2g01540 883 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 382 IPR023298 -
Pumo2g01540 883 FunFam Putative cadmium/zinc-transporting ATPase 3 2 75 - -
Pumo2g01540 883 Gene3D - 379 638 IPR023214 -
Pumo2g01540 883 Gene3D - 177 291 - -
Pumo2g01540 883 PRINTS P-type cation-transporting ATPase superfamily signature 511 522 - -
Pumo2g01540 883 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Pumo2g01540 883 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Pumo2g01540 883 PRINTS P-type cation-transporting ATPase superfamily signature 533 543 - -
Pumo2g01540 883 PRINTS P-type cation-transporting ATPase superfamily signature 587 606 - -
Pumo2g01540 883 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Pumo2g01540 883 FunFam Putative cadmium/zinc-transporting ATPase 3 399 519 - -
Pumo2g01540 883 Pfam E1-E2 ATPase 198 366 - -
Pumo2g01540 883 SFLD C1.7: P-type atpase like 371 640 - -
Pumo2g01540 883 CDD HMA 10 72 IPR006121 GO:0046872
Pumo2g01540 883 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Pumo2g01540 883 ProSitePatterns Hypothetical cof family signature 2. 587 609 - -
Pumo2g01540 883 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Pumo2g01540 883 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Pumo2g01540 883 SUPERFAMILY HAD-like 386 688 IPR036412 -
Pumo2g01540 883 NCBIfam HAD-IC family P-type ATPase 162 668 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo2g01540 883 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Pumo2g01540 883 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 694 - -
Pumo2g01540 883 PRINTS Cadmium-transporting ATPase signature 272 286 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo2g01540 883 PRINTS Cadmium-transporting ATPase signature 10 19 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo2g01540 883 PRINTS Cadmium-transporting ATPase signature 21 42 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo2g01540 883 PRINTS Cadmium-transporting ATPase signature 174 194 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo2g01540 883 PRINTS Cadmium-transporting ATPase signature 253 269 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo2g01540 883 Gene3D - 1 75 - -
Pumo2g01540 883 SUPERFAMILY HMA, heavy metal-associated domain 3 73 IPR036163 GO:0046872
Pumo2g01540 883 NCBIfam heavy metal translocating P-type ATPase 139 689 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pumo2g01540 883 Pfam haloacid dehalogenase-like hydrolase 384 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01540 Pumo-Chr2 28534476 28540800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01540 3 814 Primary Pumps ATPases AT4G30110 54.358 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01540 K01534 - gmx:100815324 1567.75