Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01538 ATGAAGTATATTAGGAGTAACAGCTTGAAGAGACTCTTCTCGTTCGGGAGACGTGGGTTTGGGGAAGAAAACGATGTGGGGTTGGTGGTTTCTCCTTGTGAAGAGCACCCTCCAAGACCCTCTTGGAAATGCTTCTCCTATGAAGAGTTGTTTGATGCCACCAATGGCTTTAGCTCAGGGAATCTGATTGGGAAAGGAGGGTATGCAGAGGTTTATAAGGGAATGTTGAATGATGGTGAGGAAGTTGCGGTGAAGAGGCTCACAAGAACTTCAAGGGATGAGAGGAAGGAGAAGGAGTTTCTGTTAGAAATTGGCACAATTGGTCACGTGCGCCATTCCAACGTGATGCCTCTTCTTGGGTGCTGTATTGACAATGGACTTTACCTCGTTTTTGAGCTATCCACCGTTGGTTCTGTTGCTTCTCTTATTCATGATGAGAACTTGCCTCCTTTGGATTGGAAAACAAGGTATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTATTTGCACAAAGGCTGCAAGAGGAGGATAATTCATAGGGACATCAAGTCTTCAAACATTTTGTTAACTGCAGATTTTGAACCGAAGATATCTGATTTTGGACTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTACATGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAGTCATCTCTGGGAGGAAACCAGTGGATGGGTCTCACCAAAGCTTGCACAGCTGGGCTAAACCAATACTAAACAAAGGGGAGATAGAAAAGCTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTTTGCTGCCTCCTTGTGCATTCGGGCATCTGCAAGTTGGCGACCTACCATGAGTGAGGTACTGGAGGTAATGGAGGAGTGGGAGATGGATAAAAAGAAGTGGGAAATGCCAGAGGAAGAAGAGCAAGAGGAGGAATTCTGGGGTTTTGAGGATCTGGAATATGCATATGACAGTTCCTTTTCAATGTCTCTACCTGACTCTCTGGGAAGTACTTAG 1116 0.457 MKYIRSNSLKRLFSFGRRGFGEENDVGLVVSPCEEHPPRPSWKCFSYEELFDATNGFSSGNLIGKGGYAEVYKGMLNDGEEVAVKRLTRTSRDERKEKEFLLEIGTIGHVRHSNVMPLLGCCIDNGLYLVFELSTVGSVASLIHDENLPPLDWKTRYKIALGTARGLHYLHKGCKRRIIHRDIKSSNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILNKGEIEKLVDPRLGGAYDVTQFNRVAFAASLCIRASASWRPTMSEVLEVMEEWEMDKKKWEMPEEEEQEEEFWGFEDLEYAYDSSFSMSLPDSLGST 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01538 371 Pfam Protein tyrosine and serine/threonine kinase 60 265 IPR001245 GO:0004672|GO:0006468
Pumo2g01538 371 FunFam Putative receptor-like serine/threonine-protein kinase 135 348 - -
Pumo2g01538 371 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01538 371 SMART serkin_6 57 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01538 371 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Pumo2g01538 371 FunFam Putative receptor-like serine/threonine-protein kinase 27 133 - -
Pumo2g01538 371 Gene3D Phosphorylase Kinase; domain 1 32 133 - -
Pumo2g01538 371 SUPERFAMILY Protein kinase-like (PK-like) 35 327 IPR011009 -
Pumo2g01538 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Pumo2g01538 371 CDD STKc_IRAK 63 326 - -
Pumo2g01538 371 Gene3D Transferase(Phosphotransferase) domain 1 135 351 - -
Pumo2g01538 371 PANTHER OS08G0249100 PROTEIN 36 352 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01538 Pumo-Chr2 28483910 28487619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01538 41 360 Trihelix Transcription Factor Family AT5G38560 40.176 7.39e-73 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Pumo2g01538 PK_Tyr_Ser-Thr 9.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01538 - - gmx:100801765 676.011