Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01532 ATGTCAGACAACAACGCTCCACAAGTAAAGTATGATGTTTTTGTTAGCTTCAGGGGCGAGGACATCCGCCACGAGTTTCTTAGCCATTTGACTGAGGCTTTTGACATGAAGAAAATATATGCCTTTGTAGATGATAAACTAGAGAGGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATCATTCATTTCATTGATCATATTTTCACAAGACTATGCTTCTTCACGTTGGTGTTTAAAAGAACTTGTGACTATACTTGAATGCAGAGAGAAATACGGACAGGTTGTAATACCTGTTTTCTACCATGTAGAACCCACAGATGTACGACATCAATCGAGGAGTTACAAAAATGCATTTGCTAAGCTTGGAAGGAAACATAAGACCGAGGTGCAACTCTGGAGACATGCTTTGAATAAATTTGCTGATTTATCTGGAATTGAGTCATCCAAATTCCAAAATGATGCTGATCTGGTTAAAGAAATTGTCAATCTTGTGCTGAAGAGGTTGGTTAAACCCACAGTTATCTCAAAAGGACTTGTTGGAATTGACGAAAAAATTGCAACAGTAGAATCATGGGTAAGAGAAGATCCAAAAGAAACTTGTCTTATTGGAATTTGGGGTATGGGAGGTGTCGGCAAGACAACCCTTGCAGAAGAAGTATTTAATAAACTACAATCTGAATATGATAGTTGCTATTTTTTAGCCCATGAAAGAGAAGAATCAAACAAACATGGAATAGTTTCTTTGAAGGGAAAATTTTTTTCTGCACTATTAGGATATGATGTGAAAATTTATACACCAAATTCATTGCCCGAAGATATTGTTAGGAGAATTGGTAGTATGAAGGTTCTTATTGTCCTTGATGATGTGAATGATTCAAATCACATAGAAAAGCTGTTGGGAACTCTTGATAATTTTGGATCAGGTAGCAAAATAATTGTAACAACTAGAGATGAGCAAGTGCTTAAGGCTAACAAAGTCGATGAGACATACCAGCTTAGAGAATTAAGTTCCGATAAAGCACTTGAACTTTTCAATTTGAATGCCTTTAAGCAAAGTGATCAGAAAAGAGAGTACAATGAGCTATCAAAAAGGGTGGTCAATTATGCCCAAGGCATTCCATTAGTTGTTAAAGTTTTGGCTGGTCTTCTTTGTGGCAAAAATAAGGAAGAATGGGAAAGTATGATAGACAAGCTTAAAAAAACACCTCCTACAGAAGTTTATGAAGTAATGAAACTGAGTTACGATGGTCTAGATCACAAAGAACAACAAATTTTTCTAGATTTGGCATGTTTCCTTCTTAGAAAGCATATTGTACATGTGGGCGATCTAAAATCATTATTGAAAGATAATGAAAGTGATAATTCAGTGGCTTTTAGGTTAGCAAGGCTCAAAGACAAAGCTCTTATAACTTTCTCTGGGGATAATATTGTATCTATGCATGATAGTTTACAAGAAATGGCCTGGAGGATTGTTCGTCGAGAATCTATTGAAGACCCTGGAAGCCGTAGTCGGTTGTGGGATCCAGATGACATATATGAAGCATTGAAAAATGACAAGGTTTCTGAGGCCATTAGAAGCATACGAATTCACTTGCCAACAATTAAGGGGCAAAAGTTAATGCCTCACATACTTGCTAAGATGAGCAAACTAAAATTTCTAGAAATTTCTGGGGAAGATAATTATGATTCTTACCATCAACTTATTCTTGCGGCTGAAGGGCTTCAGTTTTCGGCAACTGAACTAAGATTTCTTTGTTGGGAGAATTACCCTCTAAAATCATTGCCAGGGAATTTTTCTGCCGAAAAACTTGTAATATTGAAATTGACATATGGCAGAATGGAAAAACTTTGGGATGGAGTGAAGAATCTGGTAAATTTAAAAGAAGTTGACCTCAGTGTCTCCTGGTTAAAGGAGCTTCCAGATTTATCAAAAGCCACAAATCTTGAAGTACTGCTTCTCAGGGAATGTTCTATGTTGACTACTGTGCATCCATCTATTTTCTCTCTGCCCAAACTTGAGAAATTGGTCCTTTCTTACTGCCGGTCCCTCAGTTATCTCAACCTTCATTTTTATGAGAATGGTACAGAATTCTCACTGATATCAGAGAATATGAAAGGACTGAGATTACATCTAGATAGAAGTGGCATTGAGAGGTTACCTTCATCCTTCAACAACCTTACTCAACTGCTACATCTAGACATAAGTGATTGCAAGAATATTCAAACAATACCAGAGCTTCCCCCGCTGCTTAAAACTCTATATGCTAGATACTCTAGTTCACTTCAGAGTCTACCAAAGCTTCCCCTATCGCTTGAAACTCTAGATGCTACATTCTGTAGGTCACTTCAGAGTCTACCAGAGCTTCCCCTATTCCTTAAAACTATACATGCCAGTCATTGTAGATCACTCCAGAGTCTACCAGAGCTTCCCCTATTCCTTAAAACTCTAAATGTCAGTTCATGTGAATCACTTCAGAGTCTACCAGAGCTTCCCCCATTGCTTGAAACTCTAGATGCTAGGAAATGTAGCTCATTTCGGAGGCTACCAGAGCTTGCCCCATTGCTTGAAACTCTAAATGCCCAATCCTGCGCTTCACTTCAGAGTCTACCAAAGCTTCCTCCATCCCTTAAAACTCTAGACGCCATGGACTGCAAAATATTGAAGACTTTGTTTCCTTCAATAGCTGTTGAACAATTGATGGAAAACAGGACAAAGGTTCTGTTCTGGAATTGCTTGAACTTGGACGAACATTCTCTACTGGAAATTGGGTTGAATGTGCAAATCAATGTGATGAAATTTGCAAACCAGCACCTATCTACACCAAATCACCATCATGTTGAAAATTACAATGATTATAATTATAAATATAGTTCTTATCACGCTGTTTACGTATATCCAGGAAGAAGTGTTCCAGAGTGGTTTGAGTATAAGACAACAAAGGATTATATAATTCTGGATCTCTCTTCTGCTTCACCTTCCCCCCGCCTCAGCTTCATTTTCTGCTTCGTCATTGATGAGTACCTACAGTACTCCATTGACACACTTGCAATCGACATCTCTATAAGTGATGATGAGGATGAAGGCCAAGGTCATGCAAATCACTTAACCACCGAAGCTGAGAATATTTCCGCAAAGGATCAAGCTCGTTGGAAGCAAATTGACACCTCCATATGCAATGTTCTCTAG 3198 0.3824 MSDNNAPQVKYDVFVSFRGEDIRHEFLSHLTEAFDMKKIYAFVDDKLERGDEIWPSLVGAIEGSFISLIIFSQDYASSRWCLKELVTILECREKYGQVVIPVFYHVEPTDVRHQSRSYKNAFAKLGRKHKTEVQLWRHALNKFADLSGIESSKFQNDADLVKEIVNLVLKRLVKPTVISKGLVGIDEKIATVESWVREDPKETCLIGIWGMGGVGKTTLAEEVFNKLQSEYDSCYFLAHEREESNKHGIVSLKGKFFSALLGYDVKIYTPNSLPEDIVRRIGSMKVLIVLDDVNDSNHIEKLLGTLDNFGSGSKIIVTTRDEQVLKANKVDETYQLRELSSDKALELFNLNAFKQSDQKREYNELSKRVVNYAQGIPLVVKVLAGLLCGKNKEEWESMIDKLKKTPPTEVYEVMKLSYDGLDHKEQQIFLDLACFLLRKHIVHVGDLKSLLKDNESDNSVAFRLARLKDKALITFSGDNIVSMHDSLQEMAWRIVRRESIEDPGSRSRLWDPDDIYEALKNDKVSEAIRSIRIHLPTIKGQKLMPHILAKMSKLKFLEISGEDNYDSYHQLILAAEGLQFSATELRFLCWENYPLKSLPGNFSAEKLVILKLTYGRMEKLWDGVKNLVNLKEVDLSVSWLKELPDLSKATNLEVLLLRECSMLTTVHPSIFSLPKLEKLVLSYCRSLSYLNLHFYENGTEFSLISENMKGLRLHLDRSGIERLPSSFNNLTQLLHLDISDCKNIQTIPELPPLLKTLYARYSSSLQSLPKLPLSLETLDATFCRSLQSLPELPLFLKTIHASHCRSLQSLPELPLFLKTLNVSSCESLQSLPELPPLLETLDARKCSSFRRLPELAPLLETLNAQSCASLQSLPKLPPSLKTLDAMDCKILKTLFPSIAVEQLMENRTKVLFWNCLNLDEHSLLEIGLNVQINVMKFANQHLSTPNHHHVENYNDYNYKYSSYHAVYVYPGRSVPEWFEYKTTKDYIILDLSSASPSPRLSFIFCFVIDEYLQYSIDTLAIDISISDDEDEGQGHANHLTTEAENISAKDQARWKQIDTSICNVL 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01532 1065 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 751 IPR044974 GO:0006952
Pumo2g01532 1065 Gene3D - 338 422 IPR042197 -
Pumo2g01532 1065 SUPERFAMILY L domain-like 534 867 - -
Pumo2g01532 1065 Gene3D - 8 169 IPR035897 -
Pumo2g01532 1065 SMART LRR_bac_2 751 771 - -
Pumo2g01532 1065 SMART LRR_bac_2 814 834 - -
Pumo2g01532 1065 SMART LRR_bac_2 856 876 - -
Pumo2g01532 1065 SMART LRR_bac_2 835 855 - -
Pumo2g01532 1065 SMART LRR_bac_2 772 792 - -
Pumo2g01532 1065 SMART LRR_bac_2 793 813 - -
Pumo2g01532 1065 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
Pumo2g01532 1065 SMART till_3 10 146 IPR000157 GO:0007165
Pumo2g01532 1065 SUPERFAMILY "Winged helix" DNA-binding domain 408 520 IPR036390 -
Pumo2g01532 1065 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 174 - -
Pumo2g01532 1065 ProSiteProfiles TIR domain profile. 9 172 IPR000157 GO:0007165
Pumo2g01532 1065 Gene3D - 170 334 IPR027417 -
Pumo2g01532 1065 Pfam NB-ARC domain 197 418 IPR002182 GO:0043531
Pumo2g01532 1065 Gene3D Ribonuclease Inhibitor 764 947 IPR032675 -
Pumo2g01532 1065 Pfam TIR domain 10 172 IPR000157 GO:0007165
Pumo2g01532 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 432 IPR027417 -
Pumo2g01532 1065 PRINTS Disease resistance protein signature 373 387 - -
Pumo2g01532 1065 PRINTS Disease resistance protein signature 728 744 - -
Pumo2g01532 1065 PRINTS Disease resistance protein signature 280 294 - -
Pumo2g01532 1065 PRINTS Disease resistance protein signature 205 220 - -
Pumo2g01532 1065 Gene3D Ribonuclease Inhibitor 528 759 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01532 Pumo-Chr2 27371474 27376031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01532 11 800 WRKY Transcription Factor Family AT4G12020 30.381 2.51e-86 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01532 - - gmx:100817068 1274.61