Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01530 ATGTCAGACAACAATGCTCCTCAAGTAAAGTATGATGTTTTTGTTAGCTTCAGGGGCAAGGACATCCGGCCCGGGTTTCTTAGCCATTTGACTGAGGCTTTTGACATGAAGAAAATAAATGCCTTTGTAGATGATAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTGGAGCAATTGAAGGATCATTCATTTCATTGATCATATTCTCACCAGACTATGCTTCTTCTAGTTGGTGTTTAGAAGAGGTTGTGAAAATACTTGAATGCAGAGAGAAATATGAGCGGATTGTAATCCCTGTTTTCTACGGTGTAGAACCCACAAATGTGCGATATCAATCGGGAAGTTATGAAAATGCATTTGTTGAGCATGAAAGAAAATATAAGGGTAAGGTGCAAAGATGGAGACAGGCTCTGAATAAATCTGCTGATTTATCTGGAGTTGAGTCATCAAAATTTCGAAATGACGCTAAACTGGTTAAAGAAGTTGTAATTCTTGTGCTGAAGAGATTGGCTAAACCCCAGATTAACAGAAAAAGACTTGTTGGAATTGACAAAAAAATTGCAAAAATAGAATCATGGATAAGAGAAGAGCCAAAAGACACCCGTCTTATTGGAATTTGGGGCATGGGCGGTATCGGCAAGACAACCCTTGCAGAAGAAGCATTTAATAAACTACGATTTGAATATGAAGGTTCTTATTTCTTAGCCAATGAAACAGATCAATCAAACAAACATGAATTAGTTTCTTTGAAGGAAAAAATGTTTTCTCAACTATTAGGATATGATGTTAAAATTGACACACCAAATTCATTGCCCGAAGATATTGTTAGGAGAATTGGTTGTATGAAGGTTCTTATTGTTCTTGATGATGTGAATGATGCAGAACACATAGAAAAACTATTGGGAGCTCTTGATAATTTTGGATCGAGTAGTAGAATAATTGTAACAACTAGAGATGAGCAAGTGCTTAGGGCAAACAAGGCCAATGAGATATACTCACTTGAACTATTCTATTCCGACGAAGCACTTGAGCTTTTCAATTTAAGTTCCTTTAGCCAAATTGATGATCAAAGGGAGTACAATGAGATATTAGAAAGAGTGGTCGATTATGCCCAAGGCATTCCATTAGTTGTTAAAGTTTTGGCTGGTCTTCTTCATGGAAAAAATAAGGAAGAATGGGAAATTTACAAGAAATGGCTTGGGAGATTGTATGTCAAGAGTCTATTAAAAACCCTGGAAGCCACGGTCATTTGTGGGACTGATGATATTTATGAAGCATTGAAAAATGACAAGGTTACAGAGGCCATTAGGAGCATACGAATTCGGTTGCCAATATTTAAGGAGAAAAAGTTAATGCCTCACATATTTGCTAAGCTGAGCAAACTGAGATTTCTGGAAATTTCTGTGTATAATTATTATTATTGCTACGATCAAGTTGTTCTGACAGCTAAAGGGCTTCAGTTTTTGGCAACTGAACTAATATTTCTTGTATCATTACCCACTAAAATCCCTGCCAGATAA 1527 0.3661 MSDNNAPQVKYDVFVSFRGKDIRPGFLSHLTEAFDMKKINAFVDDKLEKGDEIWPSLVGAIEGSFISLIIFSPDYASSSWCLEEVVKILECREKYERIVIPVFYGVEPTNVRYQSGSYENAFVEHERKYKGKVQRWRQALNKSADLSGVESSKFRNDAKLVKEVVILVLKRLAKPQINRKRLVGIDKKIAKIESWIREEPKDTRLIGIWGMGGIGKTTLAEEAFNKLRFEYEGSYFLANETDQSNKHELVSLKEKMFSQLLGYDVKIDTPNSLPEDIVRRIGCMKVLIVLDDVNDAEHIEKLLGALDNFGSSSRIIVTTRDEQVLRANKANEIYSLELFYSDEALELFNLSSFSQIDDQREYNEILERVVDYAQGIPLVVKVLAGLLHGKNKEEWEIYKKWLGRLYVKSLLKTLEATVICGTDDIYEALKNDKVTEAIRSIRIRLPIFKEKKLMPHIFAKLSKLRFLEISVYNYYYCYDQVVLTAKGLQFLATELIFLVSLPTKIPAR 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01530 508 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 148 IPR035897 -
Pumo2g01530 508 PRINTS Disease resistance protein signature 280 294 - -
Pumo2g01530 508 PRINTS Disease resistance protein signature 205 220 - -
Pumo2g01530 508 PRINTS Disease resistance protein signature 373 387 - -
Pumo2g01530 508 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 398 IPR044974 GO:0006952
Pumo2g01530 508 Gene3D - 171 334 IPR027417 -
Pumo2g01530 508 Pfam TIR domain 10 172 IPR000157 GO:0007165
Pumo2g01530 508 ProSiteProfiles TIR domain profile. 9 172 IPR000157 GO:0007165
Pumo2g01530 508 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 174 - -
Pumo2g01530 508 Pfam NB-ARC domain 187 405 IPR002182 GO:0043531
Pumo2g01530 508 Gene3D - 339 417 IPR042197 -
Pumo2g01530 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 415 IPR027417 -
Pumo2g01530 508 SMART till_3 10 146 IPR000157 GO:0007165
Pumo2g01530 508 Gene3D - 8 170 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01530 Pumo-Chr2 26773109 26775995 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01530 11 424 WRKY Transcription Factor Family AT4G12020 26.683 9.98e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01530 - - var:108330977 575.859