Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01525 ATGCCTAATATTTACAATGCTCTGGTAGTTAAGGGTCGAGATACTGTTGGTCAACAAATTAACGTGACTTGTGAAGTACAACAATTATTAGGAAATAATCGAGTTAGAGCTGTAGCTATGAGTGCTACAGATGGTCTAACGAGAGGAATGGAAGTGAGTGACATAAGGAGCTCCCCTAAGTGTTCCAGAATAAAAGTAGTAGATCTTTTAGCTCCTTATCATTGTGGAGGAAAAATAGGACTTTTCGATGGAGCTAGAGTGGGTAAAACAGCACTGATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCTGTATTTGGCGGAGTAGGTGAACGTACTCGTGAGGGAAATGATCTTTATATGGAAATGAAAGAATCTAGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTATATGGTCAAATGAATGAACCACCCAGAGCTCGTATGAGAGTTGGTTTAACTGCCCTGACTATGGCAGAATATTTTCGAGAAGTCAATGAACAAGATGTACTTCTATTTATCAACAATATATTCCGCTTCGTCCAAGCAGGATTTGAAGTATCTGCCTTATTGGGTCGAATGCCGTCTACTGTGGGTTATCAACCTACTCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATCACTTCTACCAAAGAGGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCCACAGACGATTTAACTGATCCCGCCCCTGCTACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCGGCCAAAGCAAGAGCACGAAAAATTGAGCGTTTCTTATCACAACCCTTTTTCGTAGCAGAAGTTTTTACCGGTTCGCCAAGGAAATATTTTGGTCTAGCAGAAACAACTAAAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCTGAACAAGCCTTTTATTTGGTAGGATCACGATTCGACTTTGATCGTTATGGACTAGTACCACGATCGAGTCCTTGGCAGGGGGGGATGTTTAGTACCGATTCTTATAGTACTGTTCGGGGTGTGGATAAACTAATTCCAGTGGATGTCTATTTTCCGGGCTGTCCACCTAAACCGGAGGCCATTATAGATGCTATAACTAAACTTCTCAAACATGGACTAATTCATAGATCATTGGGTTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCAAGGATTGGCATTCCATTGTTGTCATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCCTATGATGTAGCACCAGGAGGACTATTAGCTAGTGTATATCATCTTACGAGAATAGAGTATGGTATAGATCAACCCGAAGAGGTATGCATAAAAATATTTGTCGCAAGAAAAAATCCCAGAATTCCTTCGATTTTCTGGGTTTGGAAGAGTGTGGATTTTCAAGAAAAGGAATCTTATGATATGTTGGGAATCTCTTATGATAATCATCCACGTCTGAGACGTATTTTAATGCCCGAAAGTTGGATAGGATGGCCTTTGCATAAAGATTATATCGCCCCAAATTTTTATGAAATACAAGATGCTCACTAA 1611 0.3886 MPNIYNALVVKGRDTVGQQINVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVSDIRSSPKCSRIKVVDLLAPYHCGGKIGLFDGARVGKTALIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESRVINEQNIAESKVALVYGQMNEPPRARMRVGLTALTMAEYFREVNEQDVLLFINNIFRFVQAGFEVSALLGRMPSTVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPTDDLTDPAPATTFAHLDATTVLSRGLAAKARARKIERFLSQPFFVAEVFTGSPRKYFGLAETTKGFKLILSGELDGLPEQAFYLVGSRFDFDRYGLVPRSSPWQGGMFSTDSYSTVRGVDKLIPVDVYFPGCPPKPEAIIDAITKLLKHGLIHRSLGFDYQGIETLQIKPKDWHSIVVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYGIDQPEEVCIKIFVARKNPRIPSIFWVWKSVDFQEKESYDMLGISYDNHPRLRRILMPESWIGWPLHKDYIAPNFYEIQDAH 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01525 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 272 IPR027417 -
Pumo2g01525 536 Pfam Respiratory-chain NADH dehydrogenase, 30 Kd subunit 408 526 IPR001268 GO:0008137
Pumo2g01525 536 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 64 271 IPR000194 GO:0005524
Pumo2g01525 536 Gene3D NADH:ubiquinone oxidoreductase, 30kDa subunit 397 508 IPR037232 -
Pumo2g01525 536 SUPERFAMILY HydA/Nqo6-like 319 389 - -
Pumo2g01525 536 FunFam NAD(P)H-quinone oxidoreductase subunit J, chloroplastic 394 508 - -
Pumo2g01525 536 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 270 331 - -
Pumo2g01525 536 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 345 387 IPR006137 GO:0051536
Pumo2g01525 536 Gene3D - 341 396 - -
Pumo2g01525 536 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 359 375 IPR006138 GO:0008137|GO:0048038|GO:0051539
Pumo2g01525 536 Gene3D - 1 57 - -
Pumo2g01525 536 Gene3D - 270 334 IPR024034 -
Pumo2g01525 536 SUPERFAMILY Nqo5-like 387 531 IPR037232 -
Pumo2g01525 536 Pfam ATP synthase alpha/beta family, beta-barrel domain 1 54 IPR004100 GO:0046034|GO:1902600
Pumo2g01525 536 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 1 55 IPR036121 GO:0046034|GO:1902600
Pumo2g01525 536 Gene3D - 58 269 - -
Pumo2g01525 536 PANTHER ATP SYNTHASE 271 328 - -
Pumo2g01525 536 CDD ATP-synt_F1_beta_N 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01525 Pumo-Chr2 25818947 25823649 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01525 58 281 Primary Pumps ATPases(2) AT1G78900 26.496 7.21e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01525 K02112 - fve:10251526 447.588