Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01523 ATGATTCAACCCCAAACTCATTTGAATGTAGCTGATAATAGCAGAGCACGCAAACTGATGTGTAATCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAACAAGCAGTACCAAATACGAACTTAGAGAAATTAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAATGGTATAATAATTCAGTATGATGATAATGCTGCAATTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGTGCAATCACCCAGGAATTGAGATGGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGTATTATAA 369 0.3523 MIQPQTHLNVADNSRARKLMCNRILGASNRRYAYIGDIVVAVIKQAVPNTNLEKLEVIRAVIVRTCKELKRSNGIIIQYDDNAAIVIDQEGNPKGTRIFCAITQELRWLNFTKIVSLAPEVL 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01523 122 Hamap 50S ribosomal protein L14 [rplN]. 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01523 122 NCBIfam 50S ribosomal protein L14 1 122 IPR005745 GO:0003735|GO:0006412|GO:0015934
Pumo2g01523 122 Gene3D Ribosomal protein L14 1 122 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo2g01523 122 SMART Ribosomal_L14_2 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01523 122 FunFam 50S ribosomal protein L14, chloroplastic 1 122 - -
Pumo2g01523 122 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 121 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01523 122 Pfam Ribosomal protein L14p/L23e 1 122 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01523 122 SUPERFAMILY Ribosomal protein L14 1 122 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01523 Pumo-Chr2 25667941 25668309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01523 8 105 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 32.353 2.78e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01523 K02874 - gmx:3989333 221.861