Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01522 ATGTCCAACTCTGACGGAGCCACTAACGGCGTCACCACCCCCAACGACGCCAACAACAACGCAATCGTCGAGTCCCGAACCACTACCACCACCACCCTCGCCGTCAAGAAACCGCCGTCAAAGGACCGTCACAGCAAAGTCGACGGGCGCGGACGCCGCATTCGCATGCCGATCATCTGCGCCGCACGTGTCTTCCAGCTCACACGCGAGCTCGGCCACAAGTCGGACGGCCAGACCATCGAGTGGCTCCTCCGCCAGGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACTCCGGCCAGCTTCTCCACCGTCTCCGACCACAAGCCCCTCCTCCCTCCCCCAACCCCCTTCATCCCTCGGCAAACGCATTCGCCCCGACGAAGACTCCTCCAAAGACGACGCCGTCTCTCTCGTCGCGCCTCCCACGCCTCCCGCCCTGTGGGCCCTACCTCCCCGCCCCGACTTCGGCCAGGTCTGGAGCTTCGCCGCCGCCGCCGCCGCGCCCGAACTCGTGTCGGTGTCGCCGCAGAATTCCATGTTTCACCCTCACCAGCACCATCAACACCAACACCACCACCACCACCAGCAACAGCAACAGCAACAGCAAGCCGCCATGGGCGAGGCCTCTGCCGCGAGGCTCGGGAATTACCTCCCCGGCCACCTCAATTTGCTCGCCTCGTTGTCCGGCGGCCACGGGAATTCCGGCCGGCGAGACGACGAGCCTCGCTGAAATGA 744 0.6599 MSNSDGATNGVTTPNDANNNAIVESRTTTTTTLAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSDHKPLLPPPTPFIPRQTHSPRRRLLQRRRRLSRRASHASRPVGPTSPPRLRPGLELRRRRRRARTRVGVAAEFHVSPSPAPSTPTPPPPPATATATASRHGRGLCREARELPPRPPQFARLVVRRPREFRPARRRASLK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01522 247 ProSiteProfiles TCP domain profile. 40 94 IPR017887 -
Pumo2g01522 247 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 15 199 IPR005333 GO:0003700
Pumo2g01522 247 Pfam TCP family transcription factor 40 110 IPR017887 -
Pumo2g01522 247 MobiDBLite consensus disorder prediction 1 36 - -
Pumo2g01522 247 MobiDBLite consensus disorder prediction 37 51 - -
Pumo2g01522 247 MobiDBLite consensus disorder prediction 128 144 - -
Pumo2g01522 247 MobiDBLite consensus disorder prediction 95 247 - -
Pumo2g01522 247 MobiDBLite consensus disorder prediction 187 201 - -
Pumo2g01522 247 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01522 Pumo-Chr2 25563666 25564894 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01522 1 120 TCP Transcription Factor Family AT5G08330 70.833 2.30e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pumo2g01522 TCP 1.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01522 K16221 - gmx:100795254 199.519