Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01521 ATGATTCAACCCCAAACTCATTTGAATGTAGCTGATAACAGCAGAGCACGCGAACTGATGTGTATTCAAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAACAAGCAGTACCAAATACGAACTTAGAAAAATTAGAAGTGATCAGAGCTGTAATTGTATGTACTTGTAAAGAACTCAAACGTAGCAATGGTATAATAATTCAGTATGATGATAATGCTGCAATTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGTGCAATCGCCCGGGAATTGAGATAG 324 0.3673 MIQPQTHLNVADNSRARELMCIQILGASNRRYAYIGDIVVAVIKQAVPNTNLEKLEVIRAVIVCTCKELKRSNGIIIQYDDNAAIVIDQEGNPKGTRIFCAIARELR 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01521 107 Coils Coil 103 107 - -
Pumo2g01521 107 Gene3D Ribosomal protein L14 1 107 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo2g01521 107 SUPERFAMILY Ribosomal protein L14 1 107 IPR036853 GO:0003735|GO:0005840|GO:0006412
Pumo2g01521 107 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 107 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01521 107 Pfam Ribosomal protein L14p/L23e 1 107 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01521 107 NCBIfam 50S ribosomal protein L14 1 107 IPR005745 GO:0003735|GO:0006412|GO:0015934
Pumo2g01521 107 SMART Ribosomal_L14_2 1 107 IPR000218 GO:0003735|GO:0005840|GO:0006412
Pumo2g01521 107 Hamap 50S ribosomal protein L14 [rplN]. 1 107 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01521 Pumo-Chr2 25361065 25361388 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01521 8 105 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 34.314 4.93e-13 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01521 K02874 - gmx:3989333 199.904