Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01498 ATGGGAGCTCTTGGAGGCCATAGAGCTAGCTATAAGAAGATCAAAGGCTGTTTTGCTTCAAGGAATGACAGCAGTGAAAACAACATTGAAGCTGATCTCTCGCCTGACCCAATAACAACTAAAAACAAGCTCATAAAGATCAGTGACAGTGAGTATCTGGTGGAACATCAACATGGTGCTGGTTTTCATAATGAGGTGGAAACAGTTTCTGAGTCCAAGAAGAGCAAGGGGCATAAGTGCCCAATTTGCCTCAAGGTATTTCCATCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCACATGACTGGTGAGTCTGAGAGTAGAAGCTTTCAAACAGTTGTGCTTCAGGAACTAGTGGCAGAAATTAGGAACTTCCTTGATCTTATTCTTCCTACTGCTACTGAAGAAGAAAGAAATAGCCATGTTGACTCTAACAGACCCTGGTGTGTACTGGGTAGTAGAAGACAACCATAA 474 0.4346 MGALGGHRASYKKIKGCFASRNDSSENNIEADLSPDPITTKNKLIKISDSEYLVEHQHGAGFHNEVETVSESKKSKGHKCPICLKVFPSGQALGGHKRSHMTGESESRSFQTVVLQELVAEIRNFLDLILPTATEEERNSHVDSNRPWCVLGSRRQP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01498 157 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Pumo2g01498 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Pumo2g01498 157 Pfam C2H2-type zinc finger 78 101 - -
Pumo2g01498 157 PANTHER OS02G0659100 PROTEIN 3 120 - -
Pumo2g01498 157 SUPERFAMILY beta-beta-alpha zinc fingers 75 103 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01498 Pumo-Chr2 22953067 22954212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01498 12 136 C2H2 Transcription Factor Family AT1G26610 44.882 1.51e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo2g01498 zf-C2H2_6 6.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01498 - - gmx:102669916 251.136