Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo2g01498 | ATGGGAGCTCTTGGAGGCCATAGAGCTAGCTATAAGAAGATCAAAGGCTGTTTTGCTTCAAGGAATGACAGCAGTGAAAACAACATTGAAGCTGATCTCTCGCCTGACCCAATAACAACTAAAAACAAGCTCATAAAGATCAGTGACAGTGAGTATCTGGTGGAACATCAACATGGTGCTGGTTTTCATAATGAGGTGGAAACAGTTTCTGAGTCCAAGAAGAGCAAGGGGCATAAGTGCCCAATTTGCCTCAAGGTATTTCCATCTGGCCAAGCCTTGGGTGGCCATAAGAGATCTCACATGACTGGTGAGTCTGAGAGTAGAAGCTTTCAAACAGTTGTGCTTCAGGAACTAGTGGCAGAAATTAGGAACTTCCTTGATCTTATTCTTCCTACTGCTACTGAAGAAGAAAGAAATAGCCATGTTGACTCTAACAGACCCTGGTGTGTACTGGGTAGTAGAAGACAACCATAA | 474 | 0.4346 | MGALGGHRASYKKIKGCFASRNDSSENNIEADLSPDPITTKNKLIKISDSEYLVEHQHGAGFHNEVETVSESKKSKGHKCPICLKVFPSGQALGGHKRSHMTGESESRSFQTVVLQELVAEIRNFLDLILPTATEEERNSHVDSNRPWCVLGSRRQP | 157 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo2g01498 | 157 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Pumo2g01498 | 157 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 105 | IPR013087 | - | |
Pumo2g01498 | 157 | Pfam | C2H2-type zinc finger | 78 | 101 | - | - | |
Pumo2g01498 | 157 | PANTHER | OS02G0659100 PROTEIN | 3 | 120 | - | - | |
Pumo2g01498 | 157 | SUPERFAMILY | beta-beta-alpha zinc fingers | 75 | 103 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo2g01498 | Pumo-Chr2 | 22953067 | 22954212 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo2g01498 | 12 | 136 | C2H2 Transcription Factor Family | AT1G26610 | 44.882 | 1.51e-20 | 85.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo2g01498 | zf-C2H2_6 | 6.6e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo2g01498 | - | - | gmx:102669916 | 251.136 |