LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g01481	ATGACCTGTGCCGCCTGCTCCAATTCCGTCGAATCAGCTCTCAAATCACTCGACGGCGTCATCAGCGCCTCCGTCGCGCTGCTTCAGAACAAAGCCGACGTCGTTTTCAACTCGGCTCTGCTCAAGGATGAAGACATAAAAAATGCAATTGAAGATGCTGGGTTTGAAGCAGACATATTACCTGAATCCAGTACAGTTGGAAAGGTGCCACATGGAACCCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAAGAAATCTTCCAGGTGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTCAGGTGAAGTTGAATATGATCCCAGTGTAATTAGTAAAGATGATATAGTCAATGCGATTGAAGATTCAGGTTTTGATGGTTCATTTATACAAAGCAATGAGCAGGATAAAATAATTTTAGGGGTGGTTGGTGTGTACAGTCTGATTGACGCACAAGTTTTAGAAGGCATTCTTATCAGCACAAAAGGAGTAAGGCAGTTTCATTTTGACCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCTGAAGTTCTCAGTTCTAGATCCGTAGTTGATGCAATCCAGGAAGGAAGCAATGGAAAGTTGAAATTACATGTTAGAAGCCCGTACACAAGAATGGCTTCTAAAGACGTTGAAGAGACCTCAACTATATTTCGGCTCTTTATCTCCAGTCTGTTTCTTAGTATTCCTCTCTTCTTCATGAGGGTAGTTTGTCCTCATATACCACTAGTCTATTCCTTGTTACTTTGGCGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATCCAATTTGTGATTGGTAAGCGCTTCTACATTGCAGCTGGCAGAGCTCTTAGAAATGGTTCTACAAACATGGATGTCCTGGTTGCTGTGGGAACTACTGCTTCTTACGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGATTTTGGTCTCCAACTTACTTTGAAACAAGCGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTACTAGTTGTCAAAGATAAAGGTGGTAAATCCATTGAAGAAAGGGAAATTGATTCTTTGCTTGTTCAACCTGGGGACACATTGAAAGTTCTTCCTGGTGCAAAGATTCCTGCGGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACCGGTGAATCTGTACCTATTTTGAAGGAGGTGAATGCTCCTGTTATTGGAGGCACAATAAATTTGCATGGTGTCCTTCATGTTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATTATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTTCGGTTGTTTCTTTGGCATTATTGACATTATTGGGTTGGTATATTGCTGGGTCTATTGGAGCTTACCCAGAAGAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTAGTAATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACGGCTGTCATGGTGGCAACAGGGGTTGGGGCTAACAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGAGGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACTGCCAAGACATTCACAGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCTGAGGCTAGCAGTGAACACCCACTAGCAAAAGCAATTTTAGCATATGCACGTCATTTTCATTTCTTTGATGACTCTTCTGCTACTACTGGTACCGAGGATGATGCAATTGCAAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTTCCTGGAAGAGGTGTTCAATGTTTTATAGATGGGAAGCGTATTTTGGTTGGTAACAGGAAGTTGATGGAGGAAAATGGCATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATAATGATATATTAACTGGAGTCCTGGGGATTGCAGACCCACTAAAGAGAGAGGCTTCTGTAGTCATAGAGGGCCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACAGGAGATAACTGGAGAACGGCTCGTGCTGTTGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCAGAGGTTATGCCAGCTGGAAAAGCTGACGTTGTTCGTTCATTCCAAAAAGATGGGAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGATGTTGGTATGGCGATTGGGGCTGGAACTGACTATTGCAATAGAAGCCGCCGAGTATGTGCTGATGAAAAATAA	2562	0.4282	MTCAACSNSVESALKSLDGVISASVALLQNKADVVFNSALLKDEDIKNAIEDAGFEADILPESSTVGKVPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALATSSGEVEYDPSVISKDDIVNAIEDSGFDGSFIQSNEQDKIILGVVGVYSLIDAQVLEGILISTKGVRQFHFDQISGELDVLFDPEVLSSRSVVDAIQEGSNGKLKLHVRSPYTRMASKDVEETSTIFRLFISSLFLSIPLFFMRVVCPHIPLVYSLLLWRCGPFLMGDWLKWALVSLIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVVKDKGGKSIEEREIDSLLVQPGDTLKVLPGAKIPADGIVTWGSSYVNESMVTGESVPILKEVNAPVIGGTINLHGVLHVQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPSVVSLALLTLLGWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQRVKYVIFDKTGTLTQGKATVTTAKTFTGMERGEFLKLVASAEASSEHPLAKAILAYARHFHFFDDSSATTGTEDDAIAKSGWLFDVSDFSALPGRGVQCFIDGKRILVGNRKLMEENGIDISTEVENFVVELEESAKTGILVAYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDYCNRSRRVCADEK	853

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g01481	853	SUPERFAMILY	HAD-like	596	841	IPR036412	-
	Pumo2g01481	853	Gene3D	-	564	852	IPR023214	-
	Pumo2g01481	853	FunFam	Copper-exporting P-type ATPase A	73	142	-	-
	Pumo2g01481	853	SFLD	p-type atpase	579	841	IPR044492	-
	Pumo2g01481	853	ProSitePatterns	Heavy-metal-associated domain.	80	109	IPR017969	GO:0046872
	Pumo2g01481	853	SUPERFAMILY	HMA, heavy metal-associated domain	1	61	IPR036163	GO:0046872
	Pumo2g01481	853	NCBIfam	HAD-IC family P-type ATPase	350	618	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Pumo2g01481	853	NCBIfam	HAD-IC family P-type ATPase	674	837	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887
	Pumo2g01481	853	Gene3D	-	365	487	-	-
	Pumo2g01481	853	CDD	P-type_ATPase_Cu-like	238	840	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g01481	Pumo-Chr2	22062484	22069822	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g01481	1	840	Primary Pumps ATPases	AT5G44790	77.381	0.0	1347

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g01481	K17686		-	gmx:100804960	1560.43

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo2g01481	2	22062484	22069822	Pumo2g01481	2	22062484	22069822	ECH

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