Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01472 ATGGTTCTCTTGGCAGCCATGGTGTGTGCCTTCCTCTGCGCCCTAGGTCTCAACACAATGCTGCAATGTGTGTTCCAATGCGCCAATCGCGTCCTCACTGAGCCCCTTCGGTGGATCGCCTCAAGGAGGCTCAATTCTGGCCTCAATAAGAGAGAAATGGTGGCTTTGCCAACCTCAACTTACTCCCATTCTGGTGGCTCTCCTTCTTCTTCGGCTTCCAATTGTGCCATTTGCTTGGCGGAGTTCTCCGATGGGGACAGGATAAGGTTCCTGCCGAACTGCAATCACCGTTTTCATGTTGATTGCATTGATAAGTGGCTGCTTTCTCACTCTTCTTGCCCAACTTGTAGGAACTTGCTCAAGCCCAGTGATTTAGTACACTCCTTGCATGTTGTAGTATCATAG 405 0.5012 MVLLAAMVCAFLCALGLNTMLQCVFQCANRVLTEPLRWIASRRLNSGLNKREMVALPTSTYSHSGGSPSSSASNCAICLAEFSDGDRIRFLPNCNHRFHVDCIDKWLLSHSSCPTCRNLLKPSDLVHSLHVVVS 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01472 134 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 120 - -
Pumo2g01472 134 Pfam Ring finger domain 74 117 IPR001841 -
Pumo2g01472 134 ProSiteProfiles Zinc finger RING-type profile. 75 117 IPR001841 -
Pumo2g01472 134 SUPERFAMILY RING/U-box 74 122 - -
Pumo2g01472 134 SMART ring_2 75 116 IPR001841 -
Pumo2g01472 134 CDD RING-H2_EL5-like 75 117 - -
Pumo2g01472 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 123 IPR013083 -
Pumo2g01472 134 FunFam E3 ubiquitin-protein ligase ATL6 37 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01472 Pumo-Chr2 21989745 21990360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01472 1 128 C3H Transcription Factor Family AT3G10910 42.446 1.81e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01472 - - gmx:100803003 220.705