Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01458 ATGGAAATACAGATGTCTCAACCTGCTGAGTCACAAGGTTCTACCCTTGAAGAAACATGTGTGTTAAATCGAGAGTGCAATAATTGTGATATTGATGAAGCTTTTGTTCCAAGTCATTCAAAGACGGAAAAAGAACGAATGTCAAAGGTTGCAAAGGCTGCTATAAAAGAACTCCATAGGCTTGTGAGAATGAATAGGCCCTTATGGGACAAGTCTTCAAATGGTGGGGGATATGTTCTGGTTCGTGAAGAATATGAAAACATGTTTCCTAGGGTTGATAGCTCTAACAATCCTCACACCCATGAAGAATCTTCAAAACATCATAAAGTAGTGAAGATTGGAGCAAGACTATTGGTTGACATGCTCTTAGATTCGGTGTATGAAGAAATGAATGCTCCTATAGTGCCGAGTCGAGAATTATTCTTCCTTCGCTATTGTGAACAAATTGAAGTTGGTGCATGGGCAATAGCTCATGTGTCAATTGATTCATTCGAAGAACGTGTCCCCAATCTTTGTGCTCGAAGGCTTCCCTCTGGCTGCATTATTTGTCAATTGCCCGATGAGACTTCCATGGTTACTTGGGTTGAACACATGGTAGTCAGTGATAGGATGGAAGAAAGCTCAGAAAGAGGACTTATTGATGACAACATTGCATATGGAGCTAAAAGGTGGCTTTGGGCACTTCATAGAATGTGTGAGAGGTTTGCTTGCACTTCAATTGACAATATGCCCCTTCTATCATCTGAACAAGTGATGAATTTATTCATTGCAAAGAGGAGAGCCACAAGGTTTTCTGATCGAATGGTCAAGGACTTCTGCGAAGTTGTGCACATGGTACGCAACAAGGGGATTAGGATTCTCAATTCTAAGATGAGGATCAATTTTCGCAAGAATGAAATACCAAACTCTAAAGAAGGCACTCTTGGCACTGTCGTCACCACCATTAGGCTTCCTATTCCTTCTGAAAATCTTTTTCACTTCCTCACGGACACAAGTAAACGATCTCAGTGGGATTATCATTGCTATGGACGTCCAGCAGACAAGATTGCACACTTTGAAATTGGTGGAAACCATATTTCAATTTTTAAGATGTTCAACAAAAAAAAGGGCAATGCGATGATTTTTCAAGATAGTTATACAGATCCTTTGGGATCATATATTGTATTTTTTGAGCGCTGCCCACATCCAGATGAAACCCAAGGAGATCAAATAGCCAAGGAGCTTGGACTTGAGCCAAAACAAATAAAGCATTGGTTTCAGAACAAGAGGACGAAGATGTCTCAACCTGAAACGTCTTTGGTAAATCAAGAGTGTGATATTTGTGATCCTGGTCAAGATTTTGTTTCAAGTCATTCAGAGATGGAAGCAAAACGATTAGCAAAGGTTGCTAATCTTGCTATGGCAGAACTCCTTAAGCTTATGAGCATTAATCAGCCTTTATGGACCATGTCTTCATATGGTGTGGGATATGTTCTCGATCGTGAAAGATATGCAAACATGTTTCCTAGGGTTGATAGCTTGAACAGTCCTCACACTCATGAAGAATCTTCAAAATATTATAAAGTAGTGAGGATTAGAGCAAGGAAATTGGTTGAGATGCTTTTGCATTCGGAGGAATGGGTTAATCTTTTCCCAACAATTGTTTCAAAATCAGAAACAGTCAAAGTGCTTGATGTTGGTTCATTGGAAAATCGAAACGGAGCATTGCAAGTGGTGTATGAAGAAATGCATGCTCTTTCACCTCTAGTGTCGTCTAGAAAATTATTCTTCCTTCGTTATTGTCAGCAAGTTAGAGATGGTGCTTGGGCCATAGCTCATGTGTCAATTGATTCCATTGAAGGGCATGTTCTTGATTTTCCTGTTCAGAGGCTTCCATCTGGCTGCATCATTCATCAAATGAATGAAGAGTTTTCCATGGTTACTTGGGTTGAGCATGTGGAAGTGAATGATAGGATGGAAACAGGCTCACATAGAGGTCTTATTCATAACAATATTGCATATGGAGCTGAAAGGTGGCTTTGGGCACTTAATAGAATGTGTGAGAGGTTTGTTTGGACTTCAATTAACAATATTCCCCCTCAAGCATCTCAAAAAGAGGTGAATGCATTCAATGCAAGGAAAATGGCCATGAGGCTTTCTAATCGAATGGTTCAGGGATTTTGTGGTGTTTTGTATAAGTTACGTAATGGGGGTTCTCCACAATCTTATGAGGAAACCATCAATGAGATTAAGATCTCTTTCAGCAAGAACACAACACCAGGCATGCCAGAAGGCATAATTGCCACTGCTATCACTACCATTACGCTCCCTGTCCCTCCACAGAATATTTGTATCTTCCTCACGGATGCGAAAAACCGTTCTAAGTGGGATGTTCTTAGCTGTGGATTTCCGGTGAACGAGATTAGTCAATTCACAATGGGTGGAAATCGTATTTCAATTTTGAAGACTTTTAATCGAATAGAGAGCAATGTGATGATGTTTCAAGATAGTTATACTGATCCTCTGGGATCGTATGTGGTTTATGCTCCAATTTCTGTAGAAAACGTGAGCATGATTATGAATGGGGGGGATTCAATGGTGTCAATTCTTCCTTCGGGATTTCTGATATCTGAAGACAATCGTGCAGTTGTTGAATCATCTAATAGATCAGGAATCTCACTGTTAACCATGGCTTACCAATTATTGATTTGTAGCAACAAGGCATCAATTCAAGACCAAAACAAGGAAATTGTGGTTAGAATTGTCATCTCAACACTCCAAAAAATTAAGACTTCTTTGAATACTTCTGAGGATTAG 2796 0.3977 MEIQMSQPAESQGSTLEETCVLNRECNNCDIDEAFVPSHSKTEKERMSKVAKAAIKELHRLVRMNRPLWDKSSNGGGYVLVREEYENMFPRVDSSNNPHTHEESSKHHKVVKIGARLLVDMLLDSVYEEMNAPIVPSRELFFLRYCEQIEVGAWAIAHVSIDSFEERVPNLCARRLPSGCIICQLPDETSMVTWVEHMVVSDRMEESSERGLIDDNIAYGAKRWLWALHRMCERFACTSIDNMPLLSSEQVMNLFIAKRRATRFSDRMVKDFCEVVHMVRNKGIRILNSKMRINFRKNEIPNSKEGTLGTVVTTIRLPIPSENLFHFLTDTSKRSQWDYHCYGRPADKIAHFEIGGNHISIFKMFNKKKGNAMIFQDSYTDPLGSYIVFFERCPHPDETQGDQIAKELGLEPKQIKHWFQNKRTKMSQPETSLVNQECDICDPGQDFVSSHSEMEAKRLAKVANLAMAELLKLMSINQPLWTMSSYGVGYVLDRERYANMFPRVDSLNSPHTHEESSKYYKVVRIRARKLVEMLLHSEEWVNLFPTIVSKSETVKVLDVGSLENRNGALQVVYEEMHALSPLVSSRKLFFLRYCQQVRDGAWAIAHVSIDSIEGHVLDFPVQRLPSGCIIHQMNEEFSMVTWVEHVEVNDRMETGSHRGLIHNNIAYGAERWLWALNRMCERFVWTSINNIPPQASQKEVNAFNARKMAMRLSNRMVQGFCGVLYKLRNGGSPQSYEETINEIKISFSKNTTPGMPEGIIATAITTITLPVPPQNICIFLTDAKNRSKWDVLSCGFPVNEISQFTMGGNRISILKTFNRIESNVMMFQDSYTDPLGSYVVYAPISVENVSMIMNGGDSMVSILPSGFLISEDNRAVVESSNRSGISLLTMAYQLLICSNKASIQDQNKEIVVRIVISTLQKIKTSLNTSED 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01458 931 ProSiteProfiles START domain profile. 452 685 IPR002913 GO:0008289
Pumo2g01458 931 SUPERFAMILY Bet v1-like 48 234 - -
Pumo2g01458 931 SMART START_1 461 682 IPR002913 GO:0008289
Pumo2g01458 931 SMART START_1 3 234 IPR002913 GO:0008289
Pumo2g01458 931 ProSiteProfiles 'Homeobox' domain profile. 390 429 IPR001356 GO:0003677
Pumo2g01458 931 Gene3D - 489 664 IPR023393 -
Pumo2g01458 931 Gene3D - 387 429 - -
Pumo2g01458 931 SMART HOX_1 368 433 IPR001356 GO:0003677
Pumo2g01458 931 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 125 IPR042160 -
Pumo2g01458 931 SUPERFAMILY Homeodomain-like 389 429 IPR009057 -
Pumo2g01458 931 Pfam START domain 463 682 IPR002913 GO:0008289
Pumo2g01458 931 Pfam START domain 125 234 IPR002913 GO:0008289
Pumo2g01458 931 SUPERFAMILY Bet v1-like 454 682 - -
Pumo2g01458 931 CDD START_ArGLABRA2_like 458 681 - -
Pumo2g01458 931 SUPERFAMILY Bet v1-like 751 894 - -
Pumo2g01458 931 ProSiteProfiles START domain profile. 40 237 IPR002913 GO:0008289
Pumo2g01458 931 CDD homeodomain 389 426 IPR001356 GO:0003677
Pumo2g01458 931 Pfam Homeodomain 389 426 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01458 Pumo-Chr2 21769913 21781534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01458 452 927 Homeobox Transcription Factor Family AT1G73360 34.870 3.98e-85 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo2g01458 START 6e-26 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01458 K09338 - gmx:102667038 729.169