Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01434 ATGGATAGATTGATGGAATCTCATAGGGGAACACAAACACATCTAGTCAATAGTCAAGACCATGAGGAAGACAGCCAAGGATTGATGGCATTTTTACAAGAACGCTTGCATTCTTCTCAAGATGGAAGAGATGCGAGGGAGGAAGAAGAGGAGGAGAGGAGAAATCAAGACGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGAATGCAGATGAGCATGAGGAGGAGAGCTTGATAAGTGGTTCATATCATGAAGCTGGTGATTATTCTAATCGATCCTCATCATGGAGTTACAGGGACAATGAAACTGGTGATGATTTTGATAGAGTTGCTTCTGCATCTCCACAAACTTATCAATCTCAATCTTTCTATCAGGAAAGTCGACACTCTTCATCCACCAATCATCATTCAATGGAAATGGAACTCATATATGATTTGAGAGGGCAAATGGAGCAACTTTATAATGAGATATCTGAGCTAAGGAAATCAATAAAGGGCTGCATGGAAATGCAGATGGAATTACAACAATCCATGAAACAAGAGGTCCAAACAGCTAAAACAGAAGAAAAGAAGTCCAATAACAAGGCTCCAAAGAAAGGCAACTGCTGCATTTGCTATGAGATGAAAGTTGACTCGGTTTTGTACAGGTGTGGACACATGTGTGCATGTCTCAAGTGTGCCAACGAGTTGCAATGGAACAGTGGAAAATGTCCTATATGTCGCGCTAAAATAGTGGATGTTGTTCGTGTATATGTTGACGGTTAG 786 0.4148 MDRLMESHRGTQTHLVNSQDHEEDSQGLMAFLQERLHSSQDGRDAREEEEEERRNQDEEEEEEEEEEEEEEEEEENADEHEEESLISGSYHEAGDYSNRSSSWSYRDNETGDDFDRVASASPQTYQSQSFYQESRHSSSTNHHSMEMELIYDLRGQMEQLYNEISELRKSIKGCMEMQMELQQSMKQEVQTAKTEEKKSNNKAPKKGNCCICYEMKVDSVLYRCGHMCACLKCANELQWNSGKCPICRAKIVDVVRVYVDG 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01434 261 SMART ring_2 209 247 IPR001841 -
Pumo2g01434 261 MobiDBLite consensus disorder prediction 51 81 - -
Pumo2g01434 261 Coils Coil 42 83 - -
Pumo2g01434 261 MobiDBLite consensus disorder prediction 123 138 - -
Pumo2g01434 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 260 IPR013083 -
Pumo2g01434 261 MobiDBLite consensus disorder prediction 1 21 - -
Pumo2g01434 261 SUPERFAMILY RING/U-box 208 254 - -
Pumo2g01434 261 Coils Coil 150 177 - -
Pumo2g01434 261 CDD mRING-HC-C3HC5_NEU1 206 258 - -
Pumo2g01434 261 MobiDBLite consensus disorder prediction 91 105 - -
Pumo2g01434 261 MobiDBLite consensus disorder prediction 1 107 - -
Pumo2g01434 261 MobiDBLite consensus disorder prediction 123 142 - -
Pumo2g01434 261 PANTHER BNAC05G24000D PROTEIN 1 260 - -
Pumo2g01434 261 ProSiteProfiles Zinc finger RING-type profile. 209 248 IPR001841 -
Pumo2g01434 261 Pfam Zinc finger, C3HC4 type (RING finger) 206 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01434 Pumo-Chr2 21249864 21251441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01434 209 257 C3H Transcription Factor Family AT3G06140 40.816 3.91e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01434 - - gmx:100796627 402.905