Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01421 ATGTTCGGTCAGAGCATGGATTCTTCAAGGGATGCGGGTGGTGTGGCAGGGACAGTGCTAATTCCCATGCGTTTTGTGTGGCCATATGGAGGAAGGAGTGTGTTTCTCAGTGGTTCTTTCACACGGTGGTCTGAGCTTCTACCGATGTCGCCAGTGGAAGGTTGTCCAACTGTGTTTCAAGTTATTTATAACTTGCCACCCGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGGCATGATGAACATCAACCTTATGTACCTGGAGAATATGGGATAGTCAACACTGTTTTCTTGGCTACTGATCCTAACTATATGCCTGTTTTACCTCCAGATGTTGCTTCTGGAAATAGCATGGATGTGGATAATGACTTTCGCCGAATGCAGGTCCGGTTGACCGATGGTTCATTGAGTGAGGTGCTGCCAAGAATATCAGATACTGATGTACAGATCTCCTGTCAGCGTATTTCTGCATTTCTGTCTTCACACACCGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCTTTGGATGTTGATCTACCAGTGAAACAGGCATTTCACATACTGCATGAGCAGGGAATTTTCACAGCTCCTCTTTGGGACTTCTGCAAGGGGCAATTTGTTGGTGTTCTTAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTGGGGAATCATGGATCCAATCTGACAGAAGAGGAGCTTGAAACACATTCCATATCAGCTTGGAAAGAAGGAAAGTCGTACCTAAATAGACAGAACAATGGACATGGAACTGCATTTTCAAGATGTTTTATCCATGCAGGACCTTATGATAATCTGAAAGATATTGCCATGAAGATCTTGCAAAAGGAGGTTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGCTTCATTTCCACAGTTACTACACCTTGCTTCACTTTCAGGAATACTTAAATGCATTTGTAGGTATTTTAGGCACTGCTCTAGTACCTTGCCTGTACTTCAACTTCCAATCTGTGCAATACCTGTGGGCACGTGGGTGCCCAAAATTGGGGAATCAAATCGGCAGCCTCTAGCAATGTTGAGACCAACCGCTTCTCTTGCTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGCTCAATACCAATAGTTGATGATAATGACTCATTACTGGATATATATTGTCGGAGTGACATAACAGCTTTGGCAAAGAACAGAGCATATACACATATTAAACCTGATGAAATGACTGTTCATCAGGCTTTGCAGTTGGGCCAGGATGCATATAGTCCCTATGAGCTTAGAAGTCAAAGATGTCAGATGTGTTTGCGTTCTGATTCTCTGCATAAAGTGATGGAACGCTTAGCAAATCCAGGTGTCAGGCGGCTTGTCATCGTGGAAGCTGGCAGCAAGCGTGTAGAAGGCATTGTTTCATTGAGTGACATATTCAAGTTCTTCCTTGGTGGTTAG 1476 0.4302 MFGQSMDSSRDAGGVAGTVLIPMRFVWPYGGRSVFLSGSFTRWSELLPMSPVEGCPTVFQVIYNLPPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVFLATDPNYMPVLPPDVASGNSMDVDNDFRRMQVRLTDGSLSEVLPRISDTDVQISCQRISAFLSSHTAYELLPESGKVVALDVDLPVKQAFHILHEQGIFTAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHSISAWKEGKSYLNRQNNGHGTAFSRCFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDASFPQLLHLASLSGILKCICRYFRHCSSTLPVLQLPICAIPVGTWVPKIGESNRQPLAMLRPTASLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHIKPDEMTVHQALQLGQDAYSPYELRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFFLGG 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01421 491 Gene3D Immunoglobulins 21 109 IPR013783 -
Pumo2g01421 491 ProSiteProfiles CBS domain profile. 436 491 IPR000644 -
Pumo2g01421 491 SUPERFAMILY CBS-domain pair 356 490 IPR046342 -
Pumo2g01421 491 SUPERFAMILY E set domains 21 102 IPR014756 -
Pumo2g01421 491 Gene3D - 148 331 IPR046342 -
Pumo2g01421 491 CDD E_set_AMPKbeta_like_N 22 100 - -
Pumo2g01421 491 ProSiteProfiles CBS domain profile. 354 411 IPR000644 -
Pumo2g01421 491 SMART cbs_1 358 406 IPR000644 -
Pumo2g01421 491 SMART cbs_1 176 225 IPR000644 -
Pumo2g01421 491 SMART cbs_1 440 489 IPR000644 -
Pumo2g01421 491 Gene3D - 346 490 IPR046342 -
Pumo2g01421 491 SUPERFAMILY CBS-domain pair 156 327 IPR046342 -
Pumo2g01421 491 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 147 488 - -
Pumo2g01421 491 Pfam CBS domain 357 402 IPR000644 -
Pumo2g01421 491 Pfam CBS domain 443 489 IPR000644 -
Pumo2g01421 491 ProSiteProfiles CBS domain profile. 170 232 IPR000644 -
Pumo2g01421 491 FunFam Sucrose nonfermenting 4-like protein 18 103 - -
Pumo2g01421 491 Pfam Glycogen recognition site of AMP-activated protein kinase 21 101 IPR032640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01421 Pumo-Chr2 21097780 21108684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01421 11 123 Protein tyrosine phosphatase (PTP) family AT3G01510 28.448 9.24e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01421 - - gmx:100781819 951.044