Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01417 ATGGAAGATAGCATTGGAGGCAGTTCCTCAAACAACAACAACAACAACAACGGTGGCGGCATCAAGGAACAGGACCAGCTGCTGCCAATAGCCAATGTTGGTCGGCTCATGAAGCAGATTCTGCCTCAGAATGCGAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAATGTGTGTCGGAGTTCATAAGTTTCGTGACCAGCGAGGCTTCGGACAAGTGCAGGAAGGAGAGGAGAAAGACTGTGAATGGTGATGACATTTGTTGGGCCTTGGCAACTCTAGGCTTTGATGACTATGCTGAACCAATGAGAAGGTACTTGCATAGATATAGAGAGGTAGAGGTAGATCACAAGGTCAATCTTCAAGAAAGAGGGATTAATAGTCCTGAAGAGAAGGATGAACATGAACTATTTAAATTGAGCAATAGAGGGCTTAGTTAG 441 0.458 MEDSIGGSSSNNNNNNNGGGIKEQDQLLPIANVGRLMKQILPQNAKISKEAKETMQECVSEFISFVTSEASDKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYREVEVDHKVNLQERGINSPEEKDEHELFKLSNRGLS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01417 146 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pumo2g01417 146 SUPERFAMILY Histone-fold 24 127 IPR009072 GO:0046982
Pumo2g01417 146 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Pumo2g01417 146 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Pumo2g01417 146 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Pumo2g01417 146 MobiDBLite consensus disorder prediction 1 22 - -
Pumo2g01417 146 MobiDBLite consensus disorder prediction 124 140 - -
Pumo2g01417 146 Gene3D Histone, subunit A 16 144 IPR009072 GO:0046982
Pumo2g01417 146 MobiDBLite consensus disorder prediction 124 146 - -
Pumo2g01417 146 MobiDBLite consensus disorder prediction 1 23 - -
Pumo2g01417 146 FunFam Nuclear transcription factor Y subunit B-3 16 139 - -
Pumo2g01417 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 91 IPR003958 -
Pumo2g01417 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 123 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01417 Pumo-Chr2 20997108 20997696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01417 5 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 66.667 3.47e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pumo2g01417 CBFD_NFYB_HMF 8.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01417 K08065 - gmx:100794513 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01417 2 20997108 20997696 Pumo2g01417 2 20997108 20997696 ECH
Pumo4g00343 4 4804645 4805019 Pumo2g01417 2 20997108 20997696 PCT