Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01413 ATGCGTTTCTGCACAACAACCACTTCAAATTCAAATTCAAATTCACGCTCATTTGCGGTATCCTACCTCATCCACAATTTGGGGCTCTCCCCTGAATCTGCTTCCAAAACTTCTGACTCCTACAACATTTGTTTCAAGACTCCGGAAAAGCCTGAGTCAGTAATCAGGTTCTTCAGAGACCGCGGTTTCTCTAACTCCCAAATAAACAATATGGTTAGAAAGGTACCACGGCTGCTTTCCTGCAACCCCTGCAAAAGGGTATTGCCCAAGTTTGAATTTTTACTCTCAAAAGGTGTTTCTAGCTCTAAAATTGTTGACCTAGTGAGTAAGTACCCTAAAATGTTGACTCCAAGCCTGAAGAATCATATAGTCCCAACCTATGAATTGGTATATAGATTCTTGCAATCTGATGAGAACACTGTTGCTTGTATGTTTGGTAATTCACTTTTCTCTGGTGGCCACCTTGTGGCACGCAACATCAGAATGATGCTTGAGAATGGAGTGAGTGAATCAACCATTGCAAGTTTGCTTCGGAACCGTAGTACGGCAGTGTTCAACTCAACTGATATGCTTAAGGTGGTGGAGGAAGTAAAGGATTTGGGGTTTGATCCTTCAAAAACAGCTTTTGCTATAGCCTTGCTTGCCATGAAAAGTATGAGTCAAACCTTGTGGAATGAGAAAGTTGACGTCTTTAAGAAATGGGGTTGGTCTGATGAAGCCTTTCTTGAAGCATTTAGGAGGCACCCTCACTGTATGTTGACATCCATTGACAAAATAAATATAGTGATGAGCTTTTGGGTCAATCAGATGGGCTGGGATGCTTTGGCCCTTGTCAAAGGTCCAAAGGTTTTCGGGTTGAGTATGGAGAAAACCATCATTCCAAGAGCCTCGGTAGTGCAGTTACTTCTTGAGAAAGGTTTGCGAAAAAGGAATGCAAGCATAACTTCCCCAATTATGATAACTGAAAAGATGTTCTTGAACAGGTTTATAAAATGTTTTAAGGAGGAGTCTTCTGATCTGTTAAAGCTGTATGAGGAAAAGCTGAATCTTGCGTATACCAGGGAGAAGTCTGGCATGTTGTGCACCAAATAA 1092 0.4158 MRFCTTTTSNSNSNSRSFAVSYLIHNLGLSPESASKTSDSYNICFKTPEKPESVIRFFRDRGFSNSQINNMVRKVPRLLSCNPCKRVLPKFEFLLSKGVSSSKIVDLVSKYPKMLTPSLKNHIVPTYELVYRFLQSDENTVACMFGNSLFSGGHLVARNIRMMLENGVSESTIASLLRNRSTAVFNSTDMLKVVEEVKDLGFDPSKTAFAIALLAMKSMSQTLWNEKVDVFKKWGWSDEAFLEAFRRHPHCMLTSIDKINIVMSFWVNQMGWDALALVKGPKVFGLSMEKTIIPRASVVQLLLEKGLRKRNASITSPIMITEKMFLNRFIKCFKEESSDLLKLYEEKLNLAYTREKSGMLCTK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01413 363 Pfam mTERF 56 203 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 Pfam mTERF 219 325 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 FunFam Mitochondrial transcription termination factor-like 119 337 - -
Pumo2g01413 363 PANTHER CGI-12 PROTEIN-RELATED 15 336 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 SMART mt_12 69 100 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 SMART mt_12 242 273 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 SMART mt_12 274 308 IPR003690 GO:0003690|GO:0006355
Pumo2g01413 363 Gene3D Transcription termination factor 3, mitochondrial 149 343 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01413 Pumo-Chr2 20974413 20975790 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo2g01413 mTERF 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01413 K15032 - gmx:102663414 479.559