Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01412 ATGTTGAATACCCTTCTCTATAAATGCGTCACTTTCACAGCAACATCACGTTACCCTCTTTTCCACCACTACCCATTGCTGTTCTCTCTGCGTTTCTGCACAACAACCACTTCAAATTCATGCTCATTTGCTGTATCCTACCTCATCCACAATTTGGGGTTCTCCCCTGAATCTGCTTCCAAAACTTCTGACTCCTACAACATTTGTTTCAAGACCCCGGAAAAGCCTGAGTCAGTAATCAGGTTCTTCAGAGACCGTGGTTTCTCTAACTCCCAAATAAACAATATGGTTAGAAAGGTACCATCGCTACTTTCCTGCGACCCCTGCAAAAGGGTATTGCCCAAGTTTGAATTTTTACTCTCAAAAGGTGTTTCTAGCTCTGAAATTGTTGACCTAGTGAGTAAGTACCCTAAAATGTTGAATCCAAGCCTGAAGAATCATATAATCCCAACCTATGAATTGGTATATAGATTCTTGCAATCTGATGAGAACGCCATTGCTTGTATGGTTGGTAATTCATTTTTTAATAGTGGCCGTTTTGTGGCACACAACATCAGAGTGATGCTTGAGAATGGAGTGAATGAATCAAACATTGCAAGAATGCTTCGGCTCCATTGTAAGGGGGTGTTCAACTCAACTGATATGCTTAAGGTGTTGGAGGAAGTAAAGGATTTAGGGTTTGATCCTTCAAAAACAGGTTTTGCCATAGCATTGCTTGCCATAAATGGTACGAGTCAAACCTCGTGGAAGGAGAAAGTTGAGGTCTTCAAGAAATGGGGTTGGTCTGATGAAGCCTTTCTTGAAGCATTTAGGAGGCACCCTCACTGTATGTTTACATCCATTGACAAAATAAATATAGTGATGAGCTTTTGGGTCAATCAGATGGGCTGGGATGCTTTGGCCCTTGTCAAAGGTCCAAAGATTTTCGGGTCGAGTATGGAGAAAACAATCATTCCAAGAGCCTCAGTTATGCAGTTGCTTCTTGAGAAAGGTTTGCGAAAAAGGAATGCAAGCATAACTTCCCCATTTATGATAACTGAAAAGGGGTTCCTGAACAGGTTTATAAAATGTTTTAAGGAGGAGTCTTCTGATCTTTTAAAGCTGTATGAGGAAAAGCTGAATCTTGCGTATACCAGGGAGAAGTCTGGCATGTTGTGCACCAAATAA 1167 0.4122 MLNTLLYKCVTFTATSRYPLFHHYPLLFSLRFCTTTTSNSCSFAVSYLIHNLGFSPESASKTSDSYNICFKTPEKPESVIRFFRDRGFSNSQINNMVRKVPSLLSCDPCKRVLPKFEFLLSKGVSSSEIVDLVSKYPKMLNPSLKNHIIPTYELVYRFLQSDENAIACMVGNSFFNSGRFVAHNIRVMLENGVNESNIARMLRLHCKGVFNSTDMLKVLEEVKDLGFDPSKTGFAIALLAINGTSQTSWKEKVEVFKKWGWSDEAFLEAFRRHPHCMFTSIDKINIVMSFWVNQMGWDALALVKGPKIFGSSMEKTIIPRASVMQLLLEKGLRKRNASITSPFMITEKGFLNRFIKCFKEESSDLLKLYEEKLNLAYTREKSGMLCTK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01412 388 Gene3D Transcription termination factor 3, mitochondrial 175 368 IPR038538 -
Pumo2g01412 388 Gene3D Transcription termination factor 3, mitochondrial 52 174 IPR038538 -
Pumo2g01412 388 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Pumo2g01412 388 SMART mt_12 299 333 IPR003690 GO:0003690|GO:0006355
Pumo2g01412 388 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Pumo2g01412 388 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Pumo2g01412 388 FunFam Mitochondrial transcription termination factor-like 144 362 - -
Pumo2g01412 388 Pfam mTERF 244 350 IPR003690 GO:0003690|GO:0006355
Pumo2g01412 388 Pfam mTERF 81 223 IPR003690 GO:0003690|GO:0006355
Pumo2g01412 388 PANTHER CGI-12 PROTEIN-RELATED 41 361 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01412 Pumo-Chr2 20966647 20969571 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pumo2g01412 mTERF 2.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01412 K15032 - gmx:102663414 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00345 4 4812624 4815144 Pumo2g01412 2 20966647 20969571 PCT