Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01398 ATGCTTAGCCGGGAAGGTGAACTTAAAATAAGTTTTGGCTATCAATGCAATAGTGATAGAGGTATACCTTGCAATGGAATCCACAGAACAAGCAGTTTCTCTTGCTTGTCTGGTGCTGCCTTAAGTGCAAATGCTACACTTGCCAACACAAACATCTGCAATGGTGTAATAGGGGAAGAAATCCTTCCGAGTTTGGACTCTCCTAAATCATTTCGTAGGGTACCCTCTTCGCCAAGTCTTCCAAAGTTGGACATGTTATCATCTTCTGCCCATAGTAGTTTGTCAAACCTAAGTTGCAGCCCATCCACTCCAAGTAATATGCTTGAATATGACCCTTGTACATTAAAATCCATGAGTGCTCCTTCCAGAAGTGAAGGTTTTCTTAATGGCATGGAAGTTCAAGTTGCTGGAGGAGCAGCTGGTGAAGATAGAGTTCAAGCAGTTTGTTCTGAAGAAAATGGGTGGCTCTTCTGTGCAATTTATGATGGCTTTAATGGGAGAGATGCAGCTGACTTTCTGGCTGGTACCCTTTATGACACTATCGTATCTTATTTTAATATGTTATACTGGGATATGGAACCAGATTCCATAAAAGCTTCTAACGATGCGGGTATGGGTGGATCCTTTCAATATAATTTTGATGATAGTCTTAATCTTCAGGATCATAAATCTCCGTCAACATTTAAGGGAAACAATTCTAGTCTTGACTGTCTCGCAAACAGTACTCCACCTTCCAAATCAGAAGCATCTCCTAAATCATTTTCACAAACTACAGTACTTGATGGCCTCCAGCATGTTCTTAGTCAGGTTGAGAATGATTTCTTGTACATGGTTGAGCAGGAAATGGAGGAACGTCCGGATTTAGTTTCTATTGGATCTTGTGTTTTACTTGTGCTTCTTCATGGGAATGATTTGTACACACTTAATCTAGGTGACAGCAGAGCAGTATTGGCAACATGCAGCACAGATAACAGATTGAATGCGAATGAGAGATTGAAGGCTATCCAGCTTACAGAGAGTCACACTGTTGACAATGAAGCTGAAAGAGCTCGACTTCTTGCTGATCATCCTGATGATCCTAAAACCATAGTAGCAGGGAAAGTGAAGGGAAGACTGAAGGTTACACGAGCTTTAGGAGTGGGCTACTTGAAAAAGAAAATTCTGAATGACGCATTGATGGGAATCCTTCGAGTTCGTGATCTTACAAGCCCGCCATATATTTCAACTGATCCATCGCTGAATGTGCACAAAATCTCAGATTCCGATCAATTTGTTATAGTTGGGAGTGATGGTTTATTTGACTTCTTCAGCAATGATGAAGCAGTACAGCTTGTAGAGTCTTATATCTTGAGGAACCCTTTTGGTGATCCAGCAAAATTCCTTATTGAGCAACTAGTTGCAAGAGCAGCTGATTCTGCAGGCTTCAGCATGGAAGAGTTGATGAATGTTCCAGATGGGAGGAGGAGGAAGTACCATGATGACGTGACTGTAATGGTGATCATCCTTGGGATGAATCAACGGACTTCAAAAGCATCAATTTGCATCTAG 1548 0.4141 MLSREGELKISFGYQCNSDRGIPCNGIHRTSSFSCLSGAALSANATLANTNICNGVIGEEILPSLDSPKSFRRVPSSPSLPKLDMLSSSAHSSLSNLSCSPSTPSNMLEYDPCTLKSMSAPSRSEGFLNGMEVQVAGGAAGEDRVQAVCSEENGWLFCAIYDGFNGRDAADFLAGTLYDTIVSYFNMLYWDMEPDSIKASNDAGMGGSFQYNFDDSLNLQDHKSPSTFKGNNSSLDCLANSTPPSKSEASPKSFSQTTVLDGLQHVLSQVENDFLYMVEQEMEERPDLVSIGSCVLLVLLHGNDLYTLNLGDSRAVLATCSTDNRLNANERLKAIQLTESHTVDNEAERARLLADHPDDPKTIVAGKVKGRLKVTRALGVGYLKKKILNDALMGILRVRDLTSPPYISTDPSLNVHKISDSDQFVIVGSDGLFDFFSNDEAVQLVESYILRNPFGDPAKFLIEQLVARAADSAGFSMEELMNVPDGRRRKYHDDVTVMVIILGMNQRTSKASICI 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01398 515 Gene3D - 108 511 IPR036457 -
Pumo2g01398 515 SUPERFAMILY PP2C-like 140 503 IPR036457 -
Pumo2g01398 515 CDD PP2Cc 140 502 IPR001932 -
Pumo2g01398 515 Pfam Protein phosphatase 2C 252 457 IPR001932 -
Pumo2g01398 515 PANTHER PROTEIN PHOSPHATASE 2C 135 500 IPR015655 GO:0004722|GO:0006470
Pumo2g01398 515 ProSiteProfiles PPM-type phosphatase domain profile. 128 502 IPR001932 -
Pumo2g01398 515 SMART PP2C_4 118 500 IPR001932 -
Pumo2g01398 515 FunFam Probable protein phosphatase 2C 40 108 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01398 Pumo-Chr2 20769053 20773063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01398 6 515 PP2C-type Phosphatase Gene Family AT3G16560 61.905 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01398 - - gmx:100791404 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01398 2 20769053 20773063 Pumo2g01398 2 20769053 20773063 ECH
Pumo4g00357 4 4940123 4943888 Pumo2g01398 2 20769053 20773063 PCT