Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01397 ATGAGTGGACATGATGCAGAAGACACTGAACAGAGCATTGCTGATGTGGCAGCTTTTGTACAAAATGTTCTTCAACAGATGATCTTTGTGAAGGAGCTTTATAACACTCAACCAAAGATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAATAGATTGATTACCGCTAAGGACCATGCTTCGGTTCAGATTAACATTGGGCATGTGGATGAGAATGGCATCTACAATGGCCACTTCTCCACTTTTGCCCTCTGCGGCTTCATCCGTGCTCAGGGTGATGCTGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGCTAAGCAACAATAG 366 0.4536 MSGHDAEDTEQSIADVAAFVQNVLQQMIFVKELYNTQPKMQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGHFSTFALCGFIRAQGDADSALDRLWQKKKVEAKQQ 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01397 121 ProSitePatterns Ribosomal protein S21e signature. 50 58 IPR018279 GO:0003735|GO:0005840|GO:0006412
Pumo2g01397 121 PANTHER 40S RIBOSOMAL PROTEIN S21 40 119 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pumo2g01397 121 Pfam Ribosomal protein S21e 40 116 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pumo2g01397 121 FunFam 40S ribosomal protein S21 40 120 - -
Pumo2g01397 121 Gene3D - 36 121 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01397 Pumo-Chr2 20753810 20758994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01397 40 120 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 2.32e-52 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01397 K02971 - gmx:100817753 168.703