LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g01397	ATGAGTGGACATGATGCAGAAGACACTGAACAGAGCATTGCTGATGTGGCAGCTTTTGTACAAAATGTTCTTCAACAGATGATCTTTGTGAAGGAGCTTTATAACACTCAACCAAAGATGCAGAACGAGGAAGGACAGATCACTGAGCTTTACATTCCTAGGAAGTGCTCTGCCACAAATAGATTGATTACCGCTAAGGACCATGCTTCGGTTCAGATTAACATTGGGCATGTGGATGAGAATGGCATCTACAATGGCCACTTCTCCACTTTTGCCCTCTGCGGCTTCATCCGTGCTCAGGGTGATGCTGACAGTGCCCTAGATCGCTTGTGGCAGAAGAAGAAAGTTGAAGCTAAGCAACAATAG	366	0.4536	MSGHDAEDTEQSIADVAAFVQNVLQQMIFVKELYNTQPKMQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHVDENGIYNGHFSTFALCGFIRAQGDADSALDRLWQKKKVEAKQQ	121

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g01397	121	ProSitePatterns	Ribosomal protein S21e signature.	50	58	IPR018279	GO:0003735\|GO:0005840\|GO:0006412
	Pumo2g01397	121	PANTHER	40S RIBOSOMAL PROTEIN S21	40	119	IPR001931	GO:0003735\|GO:0005840\|GO:0006412
	Pumo2g01397	121	Pfam	Ribosomal protein S21e	40	116	IPR001931	GO:0003735\|GO:0005840\|GO:0006412
	Pumo2g01397	121	FunFam	40S ribosomal protein S21	40	120	-	-
	Pumo2g01397	121	Gene3D	-	36	121	IPR038579	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g01397	Pumo-Chr2	20753810	20758994	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo2g01397	40	120	Cytoplasmic Ribosomal Protein Gene Family	AT5G27700	85.185	2.32e-52	158

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g01397	K02971		-	gmx:100817753	168.703

Showing 1 to 1 of 1 entries