Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01366 ATGGGTGCAATGACAGCAAACCGCAAGCGCACCGAAGAATGCATGAACTTAAACCTCACCAATTCTGATTATTCGAGAAAACGCGCGAAATTCGTCCATCAATCAATGGGTGCGATGACAGCAAACCGCAAGCGTACTGAAGAATGCATGAACTTAAAGCTCACCAATTCTGATTATCCGAGAAAGCGCGCGAAATTCGTCCATCAATCAATGGGTGCGATGACAGCAAACCGCAAGCGCACCGAAGAATGCATGAACGTAAACCTCACCAATTCCGATTACCCGAGAAAACGCGCTAAATTCGTCCATCAATCAATGGGTGCGATGACAGCAAACCGCAAGCGCACCAAAGAATGCATGAACGTAAACCTCACCAATTCCGATTATCCAAAAAAACGCGCCAAATTCGTCCATCAATCAATGGGTGCGATGACGGCAAACCGCAAGCGCACCGAAGAATGCATGAACGTAAACCTCACCAATTCCGATTACCCAAAAAAACGCACCAAATTGGTCCATCAATCAATGGGTGCGATGACGGCAAACCGCAAGCCCACTGAAGAATGCATGAACGTAAACCTCACCAATTCCGATTCCCCGCAAAAACTCGAACGCGCTAGGGTTAGTGTTAGTGTCAGCGACGCCATGGGGAACGTTCTGGCCGAGAAGGAGAAGGAGGTGATAGAGGTGGACGCAGAGACAGAGAGTGAAGAGCCTCGGTTCGGGAGTTACGAGGATTCGAGTGTGAAAGAGGCGCGTGGTGATGGTGACAAGGTTGTTAGGGTTCAGCATCAGTCACAGTCAACGCTGTCGTTTGATTCGGAAGTGACGAATGCGGAGTTGAAGGTGGTGAGTGGAGGGAAGGTGTGGGGTTCTGAGACGCAGCGTGATTTGGAAAATGTTAATGTGTATAAGAAGTTGCTTGAGGATGTTGGGAGGAGAAGTGGCACACTTCAGAGGCTGAATTATGAGATTGAGTTGAATGAGAAGCGCAGGGACTATTCGTCTGCCACTAGCGCCGTCGGGAGGCTCTCCCGGTACCCGGAGGTTCACGCGCCGCTGGCCAGGGAGGTTCACGCGCCGTGCCGGCCGCGAAAATTCGAACGCGCTAGGGTTAGTATTAGTGTCAGCGACGCCATGGGGAACGTTCTGGCCGTGAAGTACAATGAGGCGATGCGTTCGGTGGACGCAGAGACAGAGAGTGAAGAGCCTCGGTTCAGGAGTTACGAGGATTCGAGTGTGGAAGAGGCGCGTGGTGATGGTGACAAGGTTCAGCAGCAGCAGCAGTCACAGTCAACGCTGTCGTTTGATTCGGAAATGACGAATGTTGGGAGGAGAAGTGGCAGGGACTATTCGTCTGCCACCAGCGCCGTCGGGAGACTCTCCCGGTACCCGAAAGTTCACGCGCCGTTGGCCAGGGAGGTTCACGCGCCGTGCCGGCCGCAAAAACTCGAACACGCTAGGGTTAGTGTTAGTGTCAGCAACGCCATGGGGAACGTTCTGGCCGAGAAGTACAATGAGGCGAAGCGTTCGGCGTCGGCGAAATGGAGGATCTTGGTGGAGAAGGGGAAGGAGGTGATAGAGGTGGACGCAGAGACAGAGAGTGAAGAGCCTCGGTTCGGGAGTTACGAGGATTCGAGTGTGGAAGAATATAACAAATATTACCTTGCATCTTCTCGGGAATTGACTCGCCTTGATTCTATCACCAAAGCTCCTGTGATTCTCCACTTTTCAGAAACCATTGCTGGTGTTATGACCATCCGTGGCTTCATAAAGCAGAACGCATTTTGTCAAGAAAACATTGACAAAGTCAATGCTAGTCTGAGAATGGATTTCCACAACAATGGTGCTAATGAATGGCTTGGTTTTCGCTTGGACTATATGGGAGTGGTTTTCCTTTGCATTGCCACTGTTTTTATGATCTTTCTTCCAAGTGCTATTATTAAGCCAGAATATGTTGGTTTGTCTTTGTCCTATGGCCTGGCTCGCAGTAGTCTCTTGGCATTTACCATAACCATGACTTGCTCTGTTGAGAACAAAATGGTTTCAGTTGAGAGAATAAAGCAGTTCACCAACCTTCCCTCAGAAGCTCCATGGAAAATTGCTGATAAAACTCCTCAGAATTGGCCCAGTCAAGGCATTATTGAGTTAAACAATTTGCAGGTTCGGTATTGGCCAAATACTCCTCTGGTTCTCAAGGGAATCCCTCTCACCATTGAAGGAGGAGAAAAGATTGGTGTTGTTGGTCGTACAGGGAGTGGAAAATCAACCCTCATACAGGTGTTATTTAGGTTGATTGAGCCTTCAGCTGGGAGAATAACTGTTGATGGAATCAACATTTGCACTGTGGGCCTTCATGATCTGAGGTCTAGATTTGGAATTACTCCTCCAGAGCCTGTCCTCTTTCAAGGAACAACAACAACAAATGTCATATAA 2436 0.4918 MGAMTANRKRTEECMNLNLTNSDYSRKRAKFVHQSMGAMTANRKRTEECMNLKLTNSDYPRKRAKFVHQSMGAMTANRKRTEECMNVNLTNSDYPRKRAKFVHQSMGAMTANRKRTKECMNVNLTNSDYPKKRAKFVHQSMGAMTANRKRTEECMNVNLTNSDYPKKRTKLVHQSMGAMTANRKPTEECMNVNLTNSDSPQKLERARVSVSVSDAMGNVLAEKEKEVIEVDAETESEEPRFGSYEDSSVKEARGDGDKVVRVQHQSQSTLSFDSEVTNAELKVVSGGKVWGSETQRDLENVNVYKKLLEDVGRRSGTLQRLNYEIELNEKRRDYSSATSAVGRLSRYPEVHAPLAREVHAPCRPRKFERARVSISVSDAMGNVLAVKYNEAMRSVDAETESEEPRFRSYEDSSVEEARGDGDKVQQQQQSQSTLSFDSEMTNVGRRSGRDYSSATSAVGRLSRYPKVHAPLAREVHAPCRPQKLEHARVSVSVSNAMGNVLAEKYNEAKRSASAKWRILVEKGKEVIEVDAETESEEPRFGSYEDSSVEEYNKYYLASSRELTRLDSITKAPVILHFSETIAGVMTIRGFIKQNAFCQENIDKVNASLRMDFHNNGANEWLGFRLDYMGVVFLCIATVFMIFLPSAIIKPEYVGLSLSYGLARSSLLAFTITMTCSVENKMVSVERIKQFTNLPSEAPWKIADKTPQNWPSQGIIELNNLQVRYWPNTPLVLKGIPLTIEGGEKIGVVGRTGSGKSTLIQVLFRLIEPSAGRITVDGINICTVGLHDLRSRFGITPPEPVLFQGTTTTNVI 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01366 811 Pfam ABC transporter 732 807 IPR003439 GO:0005524
Pumo2g01366 811 Gene3D ABC transporter type 1, transmembrane domain 551 697 IPR036640 GO:0005524|GO:0016020
Pumo2g01366 811 CDD ABC_6TM_ABCC_D2 553 691 IPR044726 GO:0140359
Pumo2g01366 811 MobiDBLite consensus disorder prediction 394 422 - -
Pumo2g01366 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 705 810 IPR027417 -
Pumo2g01366 811 SUPERFAMILY ABC transporter transmembrane region 553 698 IPR036640 GO:0005524|GO:0016020
Pumo2g01366 811 Gene3D - 700 811 IPR027417 -
Pumo2g01366 811 MobiDBLite consensus disorder prediction 234 256 - -
Pumo2g01366 811 MobiDBLite consensus disorder prediction 394 456 - -
Pumo2g01366 811 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 552 809 - -
Pumo2g01366 811 MobiDBLite consensus disorder prediction 423 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01366 Pumo-Chr2 20415050 20421609 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01366 713 811 Calmodulin-binding Proteins AT2G36910 34.653 1.01e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01366 - K05665 gmx:100804807 472.626