Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01363 ATGGAGAACAACGATGTTCCCACACGCAAATTCAAGGAGAGTAATCCTAATCCTAATTCAAACCCAGAAGACTTCGATGCAAAGGGTTACAATCTCAGCGGCAAAATCATGCTCTCGGCGATAATACTGCTTTTCTTCGTCGTCGTTTTGATGCTCTGTCTTCATATTTACGCGCGCTGGTACCTCAGGCGCGCCCGCCGCCGCCAGCTCCGGCACCACCGCGAGCGCCGCCGCACCCAGCTCGTCTTCTACAACGACGCCGTCAACCCCGCCGCCGTCTCGCGCGGCCTCGACGCCGCCGTCCTCGCCACGCTCCCCGTCTTCACCTTCGACCCGAAGTCCGCCCCGGAAACCGCGCCGGAGTGCGCGGTCTGCCTGTCGGAGTTCGAACCGGGCGAAACGGGTCGGGTCTTGCCCAAGTGTAACCACAGCTTCCACACCGAATGTATTGACATGTGGTTCCACTCGCACGCCACGTGTCCTTTGTGTCGCGCCCCGGTTGAGCGGGCACCCCAACCGGAAGCGGTTGTTATAACGGTGTCCGAACCGGATTGCGGTTCGGGCACCGTTGAAGTTGAGAACCGAACCGGTTCTTCTTCTTCTGCCTCTACGAGTAAGCCTTCGTTGGTTGGCGTCACAATTGAGGTGCCTCCGAGGGACGAGAATATTTTTCGGGCCGAGTCGGACTCGCCCTCGACTCAGTCGTCGTTTCGGTCTCCGATGAGTCGCATGTTGTCGTTTACGAGGATACTCGGCAGGGAACGGAAGGGGAACGCTTCGCCGTCGTCGTGCGGTGGCGCTTGCAGCTCCGCCGCCGAGTGTGGCGCGGAGCGAGGTGAGCGAGAGGAGACTCAGTGA 858 0.6002 MENNDVPTRKFKESNPNPNSNPEDFDAKGYNLSGKIMLSAIILLFFVVVLMLCLHIYARWYLRRARRRQLRHHRERRRTQLVFYNDAVNPAAVSRGLDAAVLATLPVFTFDPKSAPETAPECAVCLSEFEPGETGRVLPKCNHSFHTECIDMWFHSHATCPLCRAPVERAPQPEAVVITVSEPDCGSGTVEVENRTGSSSSASTSKPSLVGVTIEVPPRDENIFRAESDSPSTQSSFRSPMSRMLSFTRILGRERKGNASPSSCGGACSSAAECGAERGEREETQ 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01363 285 MobiDBLite consensus disorder prediction 187 285 - -
Pumo2g01363 285 SMART ring_2 122 163 IPR001841 -
Pumo2g01363 285 CDD RING-H2_EL5-like 121 164 - -
Pumo2g01363 285 MobiDBLite consensus disorder prediction 10 24 - -
Pumo2g01363 285 FunFam RING-H2 finger protein ATL3 88 169 - -
Pumo2g01363 285 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Pumo2g01363 285 MobiDBLite consensus disorder prediction 1 24 - -
Pumo2g01363 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 172 IPR013083 -
Pumo2g01363 285 Pfam Ring finger domain 121 164 IPR001841 -
Pumo2g01363 285 SUPERFAMILY RING/U-box 121 170 - -
Pumo2g01363 285 MobiDBLite consensus disorder prediction 227 243 - -
Pumo2g01363 285 MobiDBLite consensus disorder prediction 191 210 - -
Pumo2g01363 285 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 28 181 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01363 Pumo-Chr2 20366008 20367497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01363 22 282 Rapid Response to Elicitors AT3G16720 48.097 8.66e-67 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01363 - - gsj:114368044 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01363 2 20366008 20367497 Pumo2g01363 2 20366008 20367497 ECH
Pumo4g00386 4 5226751 5227134 Pumo2g01363 2 20366008 20367497 PCT