Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01354 ATGTGTGGAGGTGCTATCATCTCAGACTTCATTGGTGTGAAGCGTGGCCGCAACCTCGCCGCGCAGGAACTATGGTCCGAGCTTGACCCTTTCTCTGACCTCCTTGGCTTCGACAACACCACCACCGCTACTTCCAAATCCCAACAACCACCCCTGCAGAAAACTCCAGACAAAAAAGTGGTGTCATGTGAGAAGAAGAAGAAAAGCGTGGGTGCAGAGAAGAAGAGTGAGCGAGCTCGTAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGCAAGTGGGCCGCAGAGATAAGGGACCCACACAAAGGTGTCCGCGTCTGGCTCGGCACTTTCCCCACCGCCGAAGAAGCCGCCAGAGCCTACGACGACGCTGCCAAACGCATCCGCGGCGACAAGGCCAAGCTCAACTTCCCGGCCACCGCCACCGCTCCGCTGCCGCCTTCCAAAAAACAACGCTGCCTCAGCCCTAGCCTCACCGAACAAAGCAGCTGCACCTCTCAATCCACCGGATCCGTCGGATCACCGCCTTCCGCCGCCGTCCACGGCGGCGAAAGCGGAGGAGGAGATGAACTCGACCTGAAGCAACTCGAATGGTTCCTTGGTTTGGAGAATGAGCAGCTGCCTGTTACCAACACTGGCTGGGACAACGCTCAAAACAGTTTCATGGAGGACCTGTGGATGCTGGACGACGTCGTTGTGCCCAACCGTCACTTAATTTACTAG 729 0.5706 MCGGAIISDFIGVKRGRNLAAQELWSELDPFSDLLGFDNTTTATSKSQQPPLQKTPDKKVVSCEKKKKSVGAEKKSERARKNVYRGIRQRPWGKWAAEIRDPHKGVRVWLGTFPTAEEAARAYDDAAKRIRGDKAKLNFPATATAPLPPSKKQRCLSPSLTEQSSCTSQSTGSVGSPPSAAVHGGESGGGDELDLKQLEWFLGLENEQLPVTNTGWDNAQNSFMEDLWMLDDVVVPNRHLIY 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01354 242 FunFam Ethylene-responsive transcription factor 2 82 141 - -
Pumo2g01354 242 SUPERFAMILY DNA-binding domain 83 141 IPR016177 GO:0003677
Pumo2g01354 242 MobiDBLite consensus disorder prediction 58 79 - -
Pumo2g01354 242 Gene3D AP2/ERF domain 83 142 IPR036955 GO:0003700|GO:0006355
Pumo2g01354 242 MobiDBLite consensus disorder prediction 140 190 - -
Pumo2g01354 242 SMART rav1_2 83 146 IPR001471 GO:0003700|GO:0006355
Pumo2g01354 242 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Pumo2g01354 242 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Pumo2g01354 242 CDD AP2 84 142 IPR001471 GO:0003700|GO:0006355
Pumo2g01354 242 Pfam AP2 domain 83 132 IPR001471 GO:0003700|GO:0006355
Pumo2g01354 242 MobiDBLite consensus disorder prediction 42 79 - -
Pumo2g01354 242 ProSiteProfiles AP2/ERF domain profile. 83 140 IPR001471 GO:0003700|GO:0006355
Pumo2g01354 242 MobiDBLite consensus disorder prediction 154 177 - -
Pumo2g01354 242 PANTHER DNA-BINDING DOMAIN 53 165 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01354 Pumo-Chr2 19848487 19850136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01354 1 234 AP2-EREBP Transcription Factor Family AT3G16770 44.853 4.75e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo2g01354 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01354 K09286 - gmx:100779626 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01354 2 19848487 19850136 Pumo2g01354 2 19848487 19850136 ECH