Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01327 ATGCCATATTATCTGCAGCCAAAAAAAATTCCACTACCCTTTTCTCTGTTTCTTCCCCTGAACTCCTTAAACAACTCACTCTTTTTATTTTATTCTTTTTTTGTGTTTCACTTTCATGATGCCAGTTTCAACCATGTGAAGTTGTTGTGTACTGTTTGGATCTTCAGAACCATGAATCTCAGCAACGGCAAGGGATCCACTTCGAGTTCTCCTCTGAAGGCCGGAGACGCCGTCTCCGACCAGTTTCCGGAGGGTCTCCGGGTGCTGGTGGTTGATGATGACCCCACGTGCCTTATGATCCTTGAGAGGATGCTGCGTGCTTGTCTCTATGAAGTGACGAAATGTAAGCGAGCCGAGGTTGCATTGTCACTCTTGAGAGAGAACAAAAATGGGTTTGACATCGTTTTAAGCGATGTGCATATGCCGGATATGGATGGATTTAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCTGATGATGGACAACATGTGGTGATGAAAGGGGTGACACATGGTGCCTGTGATTACCTGATTAAACCTGTGCGGATTGAGGCTTTGAGGAATATATGGCAGCATGTGATTCGGAAGAGAAAGAATGGTTTGAGAGATGTGGAGCAATCGGGTAGCGTGGAAGAAGGAGATCGGCCTCCAAAGGGATCTGATGATGGAGATTACTCATCTTCAGTGAATGAAGCCAAAAGCTCAAAGAAGAGGAGGGATGAGGAGGAGGAAGGAGATGAGAGGGACGATACGTCCACGTTGAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCTGTTCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGTTTGTATCTTAGAAGGCTGAGTGGAGTTTCACAGCAGCAGGGTAACTTGAACAACTCCTTCATCAGCTCACAAGAAGCAACATTTGGGGCAACCTCAATCAATGGAATTGATCTTCAAACTCTTTCAGTTGCTGGGCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCTGCAGGACTTGGCAGGACAACTGCAAAAACAGGTGTGGCTATGCCTCTATCTGACCAAAAGAACCTTTTCAGTTTTGAGAATCCAAGATTAAGATTTGGAGAAGGGTCACTACAACATTTAAGCAACAGTAAGCCAATAAATTTGCTTCATGGAATTCCTACCAACATGGAGCCAAAACAACTTGCCAATTTGCACCAATCTACCCAACCCCTTGGTAACTTTAATATGCGAGTCAATGCTCCTGCCACACAGAACAACCCCTTGTTGATGCAGATGGCTCAGTCTCAACCAAGAGGTCAGATGCTAAGTGAAAATGCTGGTTCTCATGTAACCAGGTTTACATCGTCTTTGGTGCAGCCTACAGTACCAAATGGTATTTCTAATGGTGTTTTGGGAAATGGGATTGCTGGCACCAGCAACATAACTTCTTCTTATAATCCAGTTCCACAAAACTCTTCATTGTTGAGTTTTCCCATGAACCAAACCAATGAAATGTCTGCCAGTAGTTTCCCTCTTAGAAGCACTCCAGGTATAACTAGTATCCCAACTAAAGGCATGTTTAATGAAGAAGGTATCTCTGATATTAAAGGACCTGGTGGATTTGTTCAAGGTTATGATATGTTTAATGAACTCCACCATCAGAAGCCCCATGATTGGGACTTAACAAACACAGGCATGACATATGATGGTTCTCAGCATGCAGATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTGGTCCATCAGAGTTTTCTCTCTATGCAACAGACTGTACAAAATAGAGATACTACTTCAATTGGAAAAGCCATGTTCTCCACAGGTGAAGGCATACATCAAGGTAATCTCCAAAATGTTGGTCAACACCACAATAACCTTCTTGTTGACAATTCAGTAAGGGTTAAGGCTGAAAGAATTCCTGATCCAAGCTCCCAGATTAATAACCTCTTCTCTGAGCAATATGGCCAGGAGGATCTAGTCAGTGCATTTCTGAAACAGCAAGAAGGCGTTGGACCATCAGAAAATGAGTTTGACTTTGATGGATATTCCTTAGACAACATTCTGGTTTAG 2193 0.4318 MPYYLQPKKIPLPFSLFLPLNSLNNSLFLFYSFFVFHFHDASFNHVKLLCTVWIFRTMNLSNGKGSTSSSPLKAGDAVSDQFPEGLRVLVVDDDPTCLMILERMLRACLYEVTKCKRAEVALSLLRENKNGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGQHVVMKGVTHGACDYLIKPVRIEALRNIWQHVIRKRKNGLRDVEQSGSVEEGDRPPKGSDDGDYSSSVNEAKSSKKRRDEEEEGDERDDTSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLNNSFISSQEATFGATSINGIDLQTLSVAGQLPAQSLAKLQAAGLGRTTAKTGVAMPLSDQKNLFSFENPRLRFGEGSLQHLSNSKPINLLHGIPTNMEPKQLANLHQSTQPLGNFNMRVNAPATQNNPLLMQMAQSQPRGQMLSENAGSHVTRFTSSLVQPTVPNGISNGVLGNGIAGTSNITSSYNPVPQNSSLLSFPMNQTNEMSASSFPLRSTPGITSIPTKGMFNEEGISDIKGPGGFVQGYDMFNELHHQKPHDWDLTNTGMTYDGSQHADPLQGNIDVSPSVLVHQSFLSMQQTVQNRDTTSIGKAMFSTGEGIHQGNLQNVGQHHNNLLVDNSVRVKAERIPDPSSQINNLFSEQYGQEDLVSAFLKQQEGVGPSENEFDFDGYSLDNILV 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01327 730 Gene3D - 86 216 - -
Pumo2g01327 730 MobiDBLite consensus disorder prediction 239 261 - -
Pumo2g01327 730 CDD REC_typeB_ARR-like 88 202 - -
Pumo2g01327 730 FunFam Two-component response regulator 260 323 - -
Pumo2g01327 730 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 263 320 IPR017930 -
Pumo2g01327 730 PIRSF RR_ARR_type-B 58 722 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pumo2g01327 730 SMART REC_2 86 198 IPR001789 GO:0000160
Pumo2g01327 730 FunFam Two-component response regulator 86 223 - -
Pumo2g01327 730 Pfam Myb-like DNA-binding domain 266 316 IPR001005 -
Pumo2g01327 730 ProSiteProfiles Response regulatory domain profile. 87 202 IPR001789 GO:0000160
Pumo2g01327 730 NCBIfam myb-like DNA-binding domain, SHAQKYF class 264 317 IPR006447 GO:0003677
Pumo2g01327 730 Gene3D - 261 323 - -
Pumo2g01327 730 SUPERFAMILY Homeodomain-like 261 321 IPR009057 -
Pumo2g01327 730 SUPERFAMILY CheY-like 84 206 IPR011006 -
Pumo2g01327 730 PANTHER TWO-COMPONENT RESPONSE REGULATOR 86 333 IPR045279 GO:0009736
Pumo2g01327 730 Pfam Response regulator receiver domain 88 196 IPR001789 GO:0000160
Pumo2g01327 730 MobiDBLite consensus disorder prediction 209 229 - -
Pumo2g01327 730 MobiDBLite consensus disorder prediction 209 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01327 Pumo-Chr2 19434462 19438496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01327 120 730 Response Regulator Gene Family AT3G16857 48.636 2.95e-171 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pumo2g01327 Response_reg 2.7e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01327 - K14491 gmx:100809583 1221.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01327 2 19434462 19438496 Pumo2g01327 2 19434462 19438496 ECH
Pumo4g00412 4 5503258 5507496 Pumo2g01327 2 19434462 19438496 PCT