Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01326 ATGGCCTTGCATGTCCACATCTTCTTCTTCGCCGTCATCACCGTCGTCGTCGTCTTCTTTTTTGCAGCACCGTCGGTGTCGCAGCCGCAAGCCGCCGGGTCCTGCAACGGGATATTCCTGTCGTACGTGTACACCGGCGGCTCGCGGCTGCCGCCGAATGTGTCGGACCCGGCGGAGCAGCCATACCGGTTCTCGTCGACGCTGACGGTGCTGAACAACGGGTTACAGGAGCTGAAGTTTTGGAGGGTGTTCGTGGGGTTTCAGCATGACGAGTGGTTGGTGTCTGCGTCGAACGCGGTGCTGGCCGACGGCACGAGCCTCCCCGGTTCAGTTCGGAACGGCACCGTTTTGAGCGGAGCGACGGTGAGGGATCTGAAGACGGCGGTGGAGACCGCCGGGGACTTGAATCAGATGCAGGTTCGGGTGGACATGGTAGGGACCTTGCTTGGGGTGGCGCCACCCTCTGTGCCCATGCCTTCGTCTATTACCTTGGCTAACGATGGATTCGTGTGTGGTCAACCCTCTGGTCAAGGGAGCAATGAAACTCATGTCTGTTGCACAAGCGACCCCAATTTCAAAACAAACATCACCACAGAAGAAGAGTTCCTACCCCGGCAAAAGGGTGACCTTAGCATCACATACGACATCATCAGAACCTACGATTCAGATTACTGGGCAGAGGTTACAATCGCAAACCACAACCCCTTAGGCCGTCTTGACAACTGGAGACTAAGCTGGGACTGGAACAACCAAGAGTTCATATACACAATGAAGGGTGCATATCCATTAAACGTGGATTCCTCTGACTGTGTCTTCGGTCCTCAAGGTGAATTCTACAAGGAACTCGACTTTGCCAACGTTATGAACTGTGAAAGAAGACCAACCATAGTGGACCTCCCTCCCACAATGTTCAACAACACAGATTTTGGTAAAATCCCATTTTGTTGTAGGAATGGTACTATCTTGCCACCAACAATGGACCCTAGCATGTCATCTTCAAGGTTCCAAATGCACGTGTTCAAAATGCCACCAAACCTTAACCGCTCCAACCTCGCACCACCTCATAACTGGGAGATCAAAGGTACCCTTAACCCTGATTATGAATGTGGCAACCCTATTAGGGTCAGTCCTAGTGAATCTCCTGATCCAACACACTCACCATCGAACAAATCCGCTATTGCAAGCTGGCAAGTGGTGTGCAACATCACAAAACGTGAAACACGCAAGTGTTGTGTTTCTTTCTCAGCTTACTACAATGAATCAGTTATCCCATGCAACACGTGTGCATGCGGATGCAGCAACCCGGAGAGAACGTGCAGTGCTACTTCACAAGCCATGTTGCTTCCATCAGAGGCACTTCTTGTCCCTTTTGAGAACCGAACTCAGAAGACACTTGCTTGGGCCGAGTTGAATCATTTTCCTGTGCCTAATCCCATGCCTTGTGGTGATAACTGTGGTGTGAGCATAAACTGGCACGTGGCCACGGATCACCGTAACGGTTGGACTGCGAGGGTGACACTTTTCAACTGGGGTGAGACTGATTTTGCTGACTGGTTTGCTGCACTGCAAATGGACAAAGCTGCAAAGGGGTTTGAGGAAGTGTTTTCGTTCAATGGAAGCGTTTTGGAGAGTGTGGACAACACCATATTCATGCAAGGAAAAGAGGGGCTGAACTTTCTTGTGGCGGAAACCGATGGATCTAACCCTCGGAGAGATCCTAGGGTGCCGGGGAAACAGCAATCAGTGATCTCGTTTACTAAGAAAACCACTCCTGGAATCAATGTGGTTGGTGGTGATGGGTTTCCTAGTAAGGTTTTCTTCAATGGGGAGGAATGCTCTCTTCCTTCAGTGGTTCCAAGCAGTGGTACTAGAAAGGAGTTTTCATTGGGTACTATGATGTTCCTAGTGCTGTTGTTGTCGATCATCTTCATGTGGCAATAG 1941 0.5059 MALHVHIFFFAVITVVVVFFFAAPSVSQPQAAGSCNGIFLSYVYTGGSRLPPNVSDPAEQPYRFSSTLTVLNNGLQELKFWRVFVGFQHDEWLVSASNAVLADGTSLPGSVRNGTVLSGATVRDLKTAVETAGDLNQMQVRVDMVGTLLGVAPPSVPMPSSITLANDGFVCGQPSGQGSNETHVCCTSDPNFKTNITTEEEFLPRQKGDLSITYDIIRTYDSDYWAEVTIANHNPLGRLDNWRLSWDWNNQEFIYTMKGAYPLNVDSSDCVFGPQGEFYKELDFANVMNCERRPTIVDLPPTMFNNTDFGKIPFCCRNGTILPPTMDPSMSSSRFQMHVFKMPPNLNRSNLAPPHNWEIKGTLNPDYECGNPIRVSPSESPDPTHSPSNKSAIASWQVVCNITKRETRKCCVSFSAYYNESVIPCNTCACGCSNPERTCSATSQAMLLPSEALLVPFENRTQKTLAWAELNHFPVPNPMPCGDNCGVSINWHVATDHRNGWTARVTLFNWGETDFADWFAALQMDKAAKGFEEVFSFNGSVLESVDNTIFMQGKEGLNFLVAETDGSNPRRDPRVPGKQQSVISFTKKTTPGINVVGGDGFPSKVFFNGEECSLPSVVPSSGTRKEFSLGTMMFLVLLLSIIFMWQ 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01326 646 Pfam COBRA-like protein 224 403 IPR006918 GO:0010215|GO:0016020
Pumo2g01326 646 SUPERFAMILY Carbohydrate-binding domain 206 254 IPR008965 GO:0030246
Pumo2g01326 646 PANTHER COBRA-LIKE PROTEIN 7 22 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01326 Pumo-Chr2 19429792 19433331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01326 35 629 COBRA Gene Family AT4G16120 65.174 0.0 834
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01326 - - gmx:100778971 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01326 2 19429792 19433331 Pumo2g01326 2 19429792 19433331 ECH
Pumo4g00413 4 5510130 5512699 Pumo2g01326 2 19429792 19433331 PCT