Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01319 ATGGTGAGATCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAAATCTTGACCGATTATATTCAAGAAAATGGTGAGGGCTCGTGGAAAACCTTGCCCAAGAACGCAGGTTTGTTGAGGTGTGGGAAGAGTTGTCGACTTAGATGGATCAACTATTTGAGAGCAGACGTGAAGAGAGGTAACATCACTCCTGAGGAAGAAGAGATCATTGTCAAATTGCATGCTGCTCTTGGTAATAGGTGGTCTGTGATAGCTGGACATTTACCAGGACGAACAGACAATGAGATAAAGAACTATTGGAACTCTCACCTGAGGAGAAAGATCTATTGCTTCATGAGATCTCTAAATGAGTCTCTTCCACCCATTGACATGGCTGCTGTAAACTCTGCCACAGCCAAGAGAAGAGGTCGCGGTTCAAGAAACAAGCCAGCAATGGAAGAGGAAAAAACCATGGCTTTGAGCCAAAACTCCTTTGAGTCAATGCCTAGTTGTAACAGAGAAGAAGGTGAAGAAATTTCCATGATGGATGCTTGTTATGAAATGGAGGACAATACAATTAGTAGCACAGTTGCATCATACCCCAGTGTTGAAGGCTTGGGACCATATTATCAACAATGTTGGTCTGATGATGAAATTATGAGACTTACTCACATGCTTGAAAATGGGGTGCTTGTGAATCCAATTGGTAATAATAATGCAACCCTTAAGGAGGAGCCTAATGGAAATGAATGTGGCCAGATGAATGTGGATATAATGGGAACAAATCAAAGCAAGAATGGTGTTTGGAACTCATCAAATGGGGAGAGTGGAGAATGGTACCCCAATTGTTCATCAGTGAATTCTGCTATTGATTATCAGTGGTCTGATTGGGACATGGGAGGAAGTTTTCAATCAAATAATCAGTGGAACCTTTGTGATGACCAAGTGATGAATTGCTTGTGGAGTAGTGGCATTGGTGAAATAAATGGTTTTCATCCGTAA 1005 0.4189 MVRSPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWKTLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAALGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAAVNSATAKRRGRGSRNKPAMEEEKTMALSQNSFESMPSCNREEGEEISMMDACYEMEDNTISSTVASYPSVEGLGPYYQQCWSDDEIMRLTHMLENGVLVNPIGNNNATLKEEPNGNECGQMNVDIMGTNQSKNGVWNSSNGESGEWYPNCSSVNSAIDYQWSDWDMGGSFQSNNQWNLCDDQVMNCLWSSGIGEINGFHP 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01319 334 SMART sant 66 114 IPR001005 -
Pumo2g01319 334 SMART sant 13 63 IPR001005 -
Pumo2g01319 334 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo2g01319 334 CDD SANT 16 61 IPR001005 -
Pumo2g01319 334 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo2g01319 334 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo2g01319 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo2g01319 334 FunFam Myb transcription factor 11 67 - -
Pumo2g01319 334 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 175 - -
Pumo2g01319 334 FunFam Myb transcription factor 71 116 - -
Pumo2g01319 334 CDD SANT 71 112 IPR001005 -
Pumo2g01319 334 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo2g01319 334 Gene3D - 13 66 - -
Pumo2g01319 334 Gene3D - 71 116 - -
Pumo2g01319 334 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo2g01319 334 MobiDBLite consensus disorder prediction 138 171 - -
Pumo2g01319 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01319 Pumo-Chr2 19323460 19328345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01319 1 183 MYB Transcription Factor Family AT2G47460 60.938 1.05e-73 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo2g01319 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01319 K09422 - gmx:100819041 622.468