Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01312 ATGGAAGCTTTGGCAATGTATCCAGTAATCCTTCAGCAGAAATTGCCTTCTTTTGGCAATTTAACTCAGCCAGTTTCTGGGAGCAATAGTGTTAATCTTCTGAAAAATAGTCCTATATCTTCTGGTGGTGATGACATCTTGGGCACTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAGCTTTGGAATGTGGATGAACAACATATCGGGTACACCGTGTTCCATAGATGAGTCAGCTCTTGCAGCATCAATTTCTTCTGTTCATGAACCATATTCATCGCTGGTGGCAGATAATCAGCAATCTTCTCTGCCAGAACAAGTATTTAATCTCACTGATGTGTCCCCCGTGTGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATAATAACTATCAACACCTTGCAAAGTCCAACCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAGTTGTTCAGGTTGGGGTTTACCGGTGCTGGGTATCACCACACTCTCCTGGATTGGTCAATCTCTATTTGAGCTTTGATGGCCATAAGCCCATTAGCCAAGTTGTTGATTTTGAGTATCGTACTCCTATTTTGCATGATCCAACTGCTTCAATGGAAGAGAAATACAACTGGAATGAGTTTCGACTTCAGATGAGGCTTGCTCATTTGCTCTTTGCTACAGACAAGAGCCTTAACGTTTTCTCAAGTAAAGTATCACATAATGCACTGAAAGAGGCTAGAAGATTTTCTGCCAAAACATCATTTATCTCCAAAAGTTGGCAATACATTATGAAGTCAATTGATGACAAAACAACTCCATTTTCACAAGTAAAAGATGACTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTATCTTAGGCGGCAAGAATACTGAATATGATGCGCAAGGGCAAGGTGTAATTCATTTGTGTGCAATGCTGGGATATAATTGGGCAATCTCCTTATTTTCTTGGTCGGGCTTGTCACTGGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTGTGGGGCAAGGGCAAACTTGGTCACAGATCCAACTCCACAATATCCTGGTGGATGTACTGCTGCTGATCTTGCTTATATGAAGGGATGTGATGGCTTGGCTGCATACCTTTCTGAGAAGTCTCTGGTTGGGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCTCAACTGATCCAGTAAATCCTGAGATGCTTACTGAGGACCAACTGTACCTAAAGGAGACTTTGGAAGCTTACCGTACAACTGCCGAGGCAGCAGCACGCATTCAAGCTGCATTTAGGGAGCATTCGTTTAAATTACGATATAAGGCAGTTGAAATTATCACCCCAGAGGAAGAAGCACGTCAAATAGTAGCAGCAATGAGGATTCAACATGCCTTTCGCAACTATGAGTCAAGGAAAAAGATGGCAGCCGCTGCTCGGATTCAGCTTAGATTCCGGACGTGGAAGTACCGTAGAGAATTTCTCCAAATGCGGCGTCAGGCTATCAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGCACGGAAGCAATATCGGAAAATCATATGGTCTGTTGGGGTGCTTGAGAAAGTGATCCTGCGTTGGCTTTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAATCCTGACGAGGACGAGAAGCAGGAAAGTGATACAGTTGCAGAGGAGAATTTCTTTCGGACCGGCCGGAAACAAGCCGAAGAACGCGTCGAGAGGTCTGTCGTACGTGTGCAGGCCATGTTCCGTTCTAAGAAAGCACAAGAAGAATATAGAAGGATGAAGCTGGCACATAATCAAGTAAAGCTGGAACTGGAATTAGAAGAATTCCTCAATTCTGAAGTTGACATGTTACCCAAGACATAG 1986 0.4315 MEALAMYPVILQQKLPSFGNLTQPVSGSNSVNLLKNSPISSGGDDILGTLVNEGLQSQDSFGMWMNNISGTPCSIDESALAASISSVHEPYSSLVADNQQSSLPEQVFNLTDVSPVWASSTEKTKVLVTGYFHNNYQHLAKSNLLCVCGDVSVPVEVVQVGVYRCWVSPHSPGLVNLYLSFDGHKPISQVVDFEYRTPILHDPTASMEEKYNWNEFRLQMRLAHLLFATDKSLNVFSSKVSHNALKEARRFSAKTSFISKSWQYIMKSIDDKTTPFSQVKDDLFEIALKNKLKEWLLERIILGGKNTEYDAQGQGVIHLCAMLGYNWAISLFSWSGLSLDFRDKFGWTALHWAAYYGMEKMVATLLSCGARANLVTDPTPQYPGGCTAADLAYMKGCDGLAAYLSEKSLVGQFNDMSLAGNISGSLETSSTDPVNPEMLTEDQLYLKETLEAYRTTAEAAARIQAAFREHSFKLRYKAVEIITPEEEARQIVAAMRIQHAFRNYESRKKMAAAARIQLRFRTWKYRREFLQMRRQAIKIQAAFRGFQARKQYRKIIWSVGVLEKVILRWLLKRKGFRGLQVNPDEDEKQESDTVAEENFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQVKLELELEEFLNSEVDMLPKT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01312 661 Coils Coil 624 644 - -
Pumo2g01312 661 ProSiteProfiles Ankyrin repeat region circular profile. 345 373 - -
Pumo2g01312 661 Pfam Ankyrin repeats (3 copies) 287 374 IPR002110 GO:0005515
Pumo2g01312 661 ProSiteProfiles IQ motif profile. 612 640 IPR000048 GO:0005515
Pumo2g01312 661 FunFam calmodulin-binding transcription activator 5 275 415 - -
Pumo2g01312 661 Gene3D Immunoglobulins 104 199 IPR013783 -
Pumo2g01312 661 SMART ANK_2a 345 374 IPR002110 GO:0005515
Pumo2g01312 661 SMART ANK_2a 384 415 IPR002110 GO:0005515
Pumo2g01312 661 SUPERFAMILY E set domains 109 196 IPR014756 -
Pumo2g01312 661 Gene3D - 510 556 - -
Pumo2g01312 661 ProSiteProfiles IQ motif profile. 532 556 IPR000048 GO:0005515
Pumo2g01312 661 ProSiteProfiles IQ motif profile. 490 519 IPR000048 GO:0005515
Pumo2g01312 661 ProSiteProfiles Ankyrin repeat profile. 345 377 IPR002110 GO:0005515
Pumo2g01312 661 ProSiteProfiles IQ motif profile. 456 485 IPR000048 GO:0005515
Pumo2g01312 661 ProSiteProfiles IQ motif profile. 509 538 IPR000048 GO:0005515
Pumo2g01312 661 SMART iq_5 455 477 IPR000048 GO:0005515
Pumo2g01312 661 SMART iq_5 610 632 IPR000048 GO:0005515
Pumo2g01312 661 SMART iq_5 531 553 IPR000048 GO:0005515
Pumo2g01312 661 SMART iq_5 489 511 IPR000048 GO:0005515
Pumo2g01312 661 FunFam Calmodulin-binding transcription activator 5 104 200 - -
Pumo2g01312 661 Gene3D - 269 412 IPR036770 -
Pumo2g01312 661 Pfam IQ calmodulin-binding motif 534 553 IPR000048 GO:0005515
Pumo2g01312 661 SUPERFAMILY Ankyrin repeat 291 407 IPR036770 -
Pumo2g01312 661 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 35 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01312 Pumo-Chr2 19225886 19230348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01312 13 644 CAMTA Transcription Factor Family AT3G16940 56.113 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01312 K21596 - gmx:100819198 1126.69