Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01269 ATGGCAAAACCTATATCTAAAACGGGTTTGCGTAAAAATGTACGTATTGGTCCGCGTAAGCATACTCGTAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTTAACAATACTATTATGACTGTTACAGATGTACGAGGTTGGGTGTTTTCTTGGTCCTTCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGGACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAGAAGGTCCTGGTCTTGGAAGAGATGCGACATTAAGAGGAATTCGTAGAAGTGGTATACTATTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTCAAGCCGATACAATAGGCATTGCAATGCGAAGAGTTTTACTTGGAGAAATAGAGGGAACATGTATCACATGTGTAAAATCAGAAAAAATACCACATAAATATTCTACCATAGTAGGTATTGAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCGGGACGCGTCTATTTGTTTCAAAGGTCCTGGATATGTAATTGCTCAAGACATCATTTTACCACTGCCCTCTATGGAAATCATTGATAATACTCAACATATAGCCAACGTAATAGAACCCGTTAATTTGTGTATTGAATTAAAAATTGAGAGGAATTGTTGGTATCGTATAAAAACACTAAAAAACTTTCAAGATGGAAGTTATCCTATAGATGCCATATTCATGCCTGTTCGAAATGTAAATCATAGTATTCATTCTTATGTGAATGGGAATGAAAAACAAGAGATACTCTTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAGAGAAGCGCTTTATGAAGCCTCCCGAAATTTGATTGATTTATTTATTCCCTTTTTACACGCAGAAGAAGATAACTTTAATTTCGAAAACAATGAACACAAAGTTACTTTGCTCCTTTTTACTTTTCACGATATATTGGCTAAGGATAAACTAAGGAAAAAGAAAAAAGAAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAGGATCTATAATTGTCTCAAAAGATCCAATATTCATACATTATTAGAACTTTTGAATAACAGTCAAGAAGACCTTTTGAAAATTGAACATTTTCGCGTAGAAGATGTAAAATATATATTGGACATTTTAGAAATAGAAAAGCATTTTGCAAAAATTTGA 1281 0.3435 MAKPISKTGLRKNVRIGPRKHTRKIPKGVIHVQASFNNTIMTVTDVRGWVFSWSFAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEVMIEGPGLGRDATLRGIRRSGILLNFIRDVTPMPHNGCQADTIGIAMRRVLLGEIEGTCITCVKSEKIPHKYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVIAQDIILPLPSMEIIDNTQHIANVIEPVNLCIELKIERNCWYRIKTLKNFQDGSYPIDAIFMPVRNVNHSIHSYVNGNEKQEILFLEIWTNGSLTPREALYEASRNLIDLFIPFLHAEEDNFNFENNEHKVTLLLFTFHDILAKDKLRKKKKEIALKSIFIDQLELPPRIYNCLKRSNIHTLLELLNNSQEDLLKIEHFRVEDVKYILDILEIEKHFAKI 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01269 426 CDD RNAP_alpha_NTD 131 320 - -
Pumo2g01269 426 NCBIfam DNA-directed RNA polymerase subunit alpha 128 418 IPR011773 GO:0003677|GO:0003899|GO:0006351
Pumo2g01269 426 SUPERFAMILY Translational machinery components 23 131 - -
Pumo2g01269 426 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 17 132 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g01269 426 Hamap 30S ribosomal protein S11 [rpsK]. 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g01269 426 Gene3D Ribosomal protein S11 10 135 IPR036967 GO:0003735|GO:0005840|GO:0006412
Pumo2g01269 426 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Pumo2g01269 426 Gene3D - 149 267 IPR036643 -
Pumo2g01269 426 SUPERFAMILY RBP11-like subunits of RNA polymerase 125 322 IPR036603 GO:0006351|GO:0046983
Pumo2g01269 426 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 361 418 - -
Pumo2g01269 426 Gene3D - 362 422 - -
Pumo2g01269 426 SMART rpoldneu2 121 323 IPR011263 GO:0003899|GO:0006351
Pumo2g01269 426 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 356 418 IPR011260 GO:0003677|GO:0003899|GO:0006351
Pumo2g01269 426 Pfam Ribosomal protein S11 28 132 IPR001971 GO:0003735|GO:0005840|GO:0006412
Pumo2g01269 426 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 149 268 IPR036643 -
Pumo2g01269 426 Pfam RNA polymerase Rpb3/RpoA insert domain 154 245 IPR011262 GO:0003899|GO:0006351|GO:0046983
Pumo2g01269 426 FunFam DNA-directed RNA polymerase subunit alpha 149 267 - -
Pumo2g01269 426 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 134 316 IPR011263 GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01269 Pumo-Chr2 18158015 18159516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01269 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 32.117 4.51e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01269 K03040 - gmx:3989329 531.176