Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01256 ATGGCTTCCGCTGCGCCAGGTGCAACCAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTGCCGCGTGAAGGGGAGAGAGTTTATTACTTCCCGCAAGGTCATATGGAACAGCTTGAGGCATCTATGAATCAGGGATTGGAGCAGCAAATGCCTTCCTTTAATCTGCCTTCTAAAATATTATGTAAAGTGGTCAATGTTCATCTTCGAGCTGAACCTGAAACAGATGAAGTATATGCACAAATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGATGAGCCCTGACGATACTCTGCCCGAATCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTCACTGCTTCTGACACTAGCACTCATGGAGGTTTCTCTGTTCTTAGAAGACATGCAGATGATTGTCTGCCACCGCTGGATATGACTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATCTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAGGCGCCACTTACTGACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGAGTTAGGAGGCTCATGAGACAGCAAAGCAACATGCCATCATCTGTTATATCCAGTCACAGTATGCATCTGGGTGTTCTGGCCACTGCATCTCACGCCATTGCCACGGGAACATTGTTTTCTGTATTTTACAAGCCCAGAACTAGCCGGTCTGAGTTTATTGTGAGTGTCAACAAGTACCTTGAAGCTCGAAGTCATAAACTTTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAGTTCCTGAAAGAAGGTTCAGTGGTACGATTGTGGGTGTTGGAGATAATAAATCGTCAGTCTGGGTTGATTCTGAGTGGCGATCATTAAAGGTTCAATGGGATGAACCATCGTCTATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGTCTACCCCTCCTACAAACTCCCAGCCATCCCAAAGAAACAAGAGATCGCGGCCTCCCATTTTACCTTCAACAATGCCTGATTCTTCTCTGCAAGGTGTATGGAAATCACCAGTTGAATCTGCACCATTCTCTTATCGTGACCATCAACATGGGCGAGACGTCTATCCATCACCCAATTTCAATTCCACTGCAACTGGTTTTCTTGGTTTTGGTGGGAACTGCTCTGCTTCCAACAAGTCAATATATTGGTCTAGTAGGATGGAAAACTCTACAGAATCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGGACTGCAAATGGCTGTAGGCTTTTTGGGATTCAGTTACTTGATAATTCTAATGGAGAAGAAACTCTACCAATGGTCACTTTGTCAGGAAGGGTGGGTGATGATGGCCCCCTTCCATCTTTGGATGCGGAGTCTGACCAGCATTCTGAACCATCTAATGTTAATAGATCTGATATCCCTTCGGTAAGCTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAGAGCAGGCAAATAAGAAGTTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTAACACGGTTTGATGGATATGAGGATCTGCTAAGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTTTGTGGATACACAAAAAAATGGCAGGTTGTGTACACTGATAATGAAGATGATATGATGATGGTTGGGGATGATCCATGGCTTGAATTTTGTAGCATTGTGAAGAAAATTTTCATCTACACTGCAGAGGAGGTGAAGAAGCTTTCACCCAAAATAGGACTTCCAATCAGTGAAGAAGTTAAACCCAGCAAAATGGACTCTGAAGCAGTAGTCAATCCTGAGGACCAGTCATCTATTGTGGGGCCTGGTTGCTAA 1995 0.4456 MASAAPGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVMSPDDTLPESPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWVDSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPTNSQPSQRNKRSRPPILPSTMPDSSLQGVWKSPVESAPFSYRDHQHGRDVYPSPNFNSTATGFLGFGGNCSASNKSIYWSSRMENSTESFSPVALKESGEKRQGTANGCRLFGIQLLDNSNGEETLPMVTLSGRVGDDGPLPSLDAESDQHSEPSNVNRSDIPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKGELCGYTKKWQVVYTDNEDDMMMVGDDPWLEFCSIVKKIFIYTAEEVKKLSPKIGLPISEEVKPSKMDSEAVVNPEDQSSIVGPGC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01256 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo2g01256 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Pumo2g01256 664 MobiDBLite consensus disorder prediction 349 384 - -
Pumo2g01256 664 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Pumo2g01256 664 MobiDBLite consensus disorder prediction 502 517 - -
Pumo2g01256 664 FunFam Auxin response factor 281 353 - -
Pumo2g01256 664 Pfam B3 DNA binding domain 118 218 IPR003340 GO:0003677
Pumo2g01256 664 FunFam Auxin response factor 116 220 - -
Pumo2g01256 664 SUPERFAMILY DNA-binding pseudobarrel domain 107 247 IPR015300 -
Pumo2g01256 664 SMART B3_2 118 220 IPR003340 GO:0003677
Pumo2g01256 664 MobiDBLite consensus disorder prediction 641 664 - -
Pumo2g01256 664 MobiDBLite consensus disorder prediction 347 384 - -
Pumo2g01256 664 SUPERFAMILY CAD & PB1 domains 542 617 - -
Pumo2g01256 664 Gene3D - 281 353 - -
Pumo2g01256 664 Gene3D - 115 220 IPR015300 -
Pumo2g01256 664 FunFam Auxin response factor 535 629 - -
Pumo2g01256 664 MobiDBLite consensus disorder prediction 484 517 - -
Pumo2g01256 664 Pfam AUX/IAA family 537 630 IPR033389 -
Pumo2g01256 664 Gene3D - 535 629 - -
Pumo2g01256 664 Pfam Auxin response factor 244 326 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo2g01256 664 CDD B3_DNA 116 218 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01256 Pumo-Chr2 17677807 17684592 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01256 7 658 B3 DNA Binding Superfamily AT1G59750 71.994 0.0 936
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo2g01256 B3 1.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01256 K14486 - gmx:100793224 1314.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01256 2 17677807 17684592 Pumo2g01256 2 17677807 17684592 ECH