Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01254 ATGGACAAAAAGGTAAGTTGTCAATTTGTTAACTTGACAAGATGGAAGGTTGCCATATGTGGCGAGTATATTAAATCAGGTTTCAAGACTTGTTCTCATGGAACAGCATGCAATTTTATCCACTGTTTTCGTAATCCTGGTGGAGACTATGAATGGGCTGATTCTGACGAACCTCCCCCAAAATTTTGGGTAAAAAAGATGATCGCTTTATTTGGTTATTCTGATGATTATGAGACTTTAAGGGAGCAAGGAAATTTGAGTTTGTCAAAAACAGATTCTAACAGGTACCACTCTAGAAGGTCAAGATCTAGGGAGATGGATCAGTTAAATTGCGGTAATTCTGATAGAAGAAAACTAGAAGATGAAAGAAAGCAAAGAACTCCCGATGGAGATCGGACTGCCAACTTTAAAAACAATCATAAAAGGAAATCCAGAGGCAGAACTCCTGATTCGGATTCTGACAGGGAATGGTTAGAAAAAGAGGAAAATAGGGAAAGGCACCATGAATACACTTTGAATAGCTCATTTAACAGGAACAGGGATGACAATAGCAGAAGCCATGAAGAAGATTCTGATGTGGATTGGGATACTAGGGACAATGAAAAACAGCATGGCAGAGAAGGAAGAAAGTCTAGAAAGTGGAACAGAGATAGTAGAGATAGAGATGAGGAAAAGCGCCATTCTAGCAAAAGCAAAAGCTCAATATATCCGAGTGGCGATGCTTCTGAATCTGACAAAGATTTGCTTGGTAGAGGAGAGATGGAAACACAACATGATTACTCTAGGAAAAGCTCAAGACACAGAAGATCTGGTCTTCAGGATGACTATAAATACTATGAGAATGAAAATGACAAAGTTGATGGAGGTTGGTCTCGGAAGGACAGTTACAAGCGAGAACATCATCACAAAAAGAAGAGATCAAAACATTAG 930 0.3903 MDKKVSCQFVNLTRWKVAICGEYIKSGFKTCSHGTACNFIHCFRNPGGDYEWADSDEPPPKFWVKKMIALFGYSDDYETLREQGNLSLSKTDSNRYHSRRSRSREMDQLNCGNSDRRKLEDERKQRTPDGDRTANFKNNHKRKSRGRTPDSDSDREWLEKEENRERHHEYTLNSSFNRNRDDNSRSHEEDSDVDWDTRDNEKQHGREGRKSRKWNRDSRDRDEEKRHSSKSKSSIYPSGDASESDKDLLGRGEMETQHDYSRKSSRHRRSGLQDDYKYYENENDKVDGGWSRKDSYKREHHHKKKRSKH 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01254 309 MobiDBLite consensus disorder prediction 145 231 - -
Pumo2g01254 309 MobiDBLite consensus disorder prediction 88 309 - -
Pumo2g01254 309 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 15 43 IPR000571 GO:0046872
Pumo2g01254 309 ProSiteProfiles Zinc finger C3H1-type profile. 14 44 IPR000571 GO:0046872
Pumo2g01254 309 MobiDBLite consensus disorder prediction 244 295 - -
Pumo2g01254 309 MobiDBLite consensus disorder prediction 93 137 - -
Pumo2g01254 309 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 3 186 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01254 Pumo-Chr2 17672628 17675373 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo2g01254 zf-CCCH 8.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01254 K24273 - gmx:100789091 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01254 2 17672628 17675373 Pumo2g01254 2 17672628 17675373 ECH