Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01248 ATGGGTGTAATACGCCAATGGGTGTGGCCTAAACCCAGTGAATGGGTGAAGGGTAAACTAGTTGGATGTGGATCTTTTGGCACTGTCCATTTGGCAATGAACAAATCCACCGGTGGGCTTTTTGTTGTGAAATCACCACATTCCGAGGTTGGACGCCGGGCTTTGGATAAAGAGGTCAAAATCCTAAACACTTTAAATTCATCACCATATATTGTCCAATGTTTGGGGAGTGAGGAGGAGGACCAAGGCAAACTCAATGTGTTTATGGAGTATATGGCTGGGGGTAGTTTGGCAGATGTGGCACATAAGTTTGGTGGCTCATTAGATGAAGAGGTGGTTCGGGTGTATACCAGGGAAATTCTTCATGGGTTAAAGCATCTTCACCAACATGAAATTGTGCATTGCGATCTTAAGTGCAAGAACGTGCTTTTGGGCTCATCTGGCAACATCAAGTTGGCGGATTTTGGATGTGCTAAAAGGGTAAAAGAGGAGGAGGAGGAGGAGGAGGACTTGGCAAATTGTTGGCGTGGCACTCCTTTGTGGATGGCTCCTGAAGTATTGAGGAATGAGTCTCTGGATTTTGCTGCAGATATATGGTCCTTGGGATGTACAGTTATTGAGATGGCTACTGGCACGCCTCCTTGGGCTCATGAGGTTTCAAATCCAATGACCGCTGTGCTCAGGATTGCCCATGGTGATGCCATACCTCAGTTTCCACCCCATTTCTCTAAGGAGGGTTTGGATTTCTTGAGCAGGTGCTTGGACAGACAACCCAATAAGAGGTCTACTGTTGATGAGTTACTTACCCATCCATTTGTTTCAACAATAACTTCTCAGGAACAATATGCTTCCTCACCGGCAAGTGTCTTGGAGGTTCAAAATTTCAATGATTTATATGAATTAGAAAGTTCAGAGGGGAATGATTTCTCAGTCACAAACACATTTTCATGTCATGATATTGATGACCCTAAAGACATTGCATTGGGCTCATCTGGGAATTGGATTACTGTTAGATCAGGCTGA 1023 0.4457 MGVIRQWVWPKPSEWVKGKLVGCGSFGTVHLAMNKSTGGLFVVKSPHSEVGRRALDKEVKILNTLNSSPYIVQCLGSEEEDQGKLNVFMEYMAGGSLADVAHKFGGSLDEEVVRVYTREILHGLKHLHQHEIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKEEEEEEEDLANCWRGTPLWMAPEVLRNESLDFAADIWSLGCTVIEMATGTPPWAHEVSNPMTAVLRIAHGDAIPQFPPHFSKEGLDFLSRCLDRQPNKRSTVDELLTHPFVSTITSQEQYASSPASVLEVQNFNDLYELESSEGNDFSVTNTFSCHDIDDPKDIALGSSGNWITVRSG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01248 340 Gene3D Transferase(Phosphotransferase) domain 1 12 321 - -
Pumo2g01248 340 Pfam Protein kinase domain 17 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01248 340 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Pumo2g01248 340 SMART serkin_6 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01248 340 FunFam MAP kinase kinase kinase18 10 319 - -
Pumo2g01248 340 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo2g01248 340 SUPERFAMILY Protein kinase-like (PK-like) 8 302 IPR011009 -
Pumo2g01248 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Pumo2g01248 340 CDD STKc_MAPKKK 14 273 - -
Pumo2g01248 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 14 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01248 Pumo-Chr2 17607921 17608943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01248 15 304 MAP Kinase Kinase Kinase AT5G55090 45.183 6.61e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Pumo2g01248 Pkinase 5.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01248 K20716 - gmx:100798237 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01248 2 17607921 17608943 Pumo2g01248 2 17607921 17608943 ECH